DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and kcns1

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_002938059.3 Gene:kcns1 / 100492665 XenbaseID:XB-GENE-6051189 Length:451 Species:Xenopus tropicalis


Alignment Length:444 Identity:189/444 - (42%)
Similarity:287/444 - (64%) Gaps:24/444 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 EPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEY 359
            :||.|...|  :..::|||||::..:...||.:.|.||||||..|.:.|:|:::||||.|...|:
 Frog     6 KPFWIGNFK--DHSININVGGMKKRISPITLLQFPDTRLGRLLSCDSEESILQICDDYDLVSKEF 68

  Fly   360 FFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRK-----EN 419
            :|||:|..|..:|.||.|||||::|::|..:||.::||||:.|.:|:|||.::||:||     .|
 Frog    69 YFDRNPGLFPYVLYFYETGKLHMMDDLCAFSFSQEIEYWGISEFFLDSCCSYRYHERKLESRRRN 133

  Fly   420 VHEEMRKEAESLR---------QRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFI 475
            ..|:  .:|.|:.         .:|...|...:|...:|.||..:|.|..|..:::.:.|||..:
 Frog   134 WDED--SDASSIETSVDEISDFNQDIMYFDNVQCGNLRKRLWLTMENPGYSIPSKIFSFISICVV 196

  Fly   476 VLSTIALTLNTLPQLQHIDNG-TPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNI 539
            ::|...:.:|::|:.|.:|.. .|.|:|.|..:|..||:|||.|...|...:|:..|||:..||:
 Frog   197 LISISTMCINSMPEYQQVDEDLAPVDDPILHKLEYFCISWFTFEVSSRLLLAPNLKKFFRHPLNL 261

  Fly   540 IDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSY 604
            ||::::||::::|| ::....:..:..:|.:||||||:|||.|:||||||||||:|||.||::||
 Frog   262 IDIVSVLPFYITLF-IDLTFGSDYELGNVGKVVQVFRLMRIFRVLKLARHSTGLRSLGATLKHSY 325

  Fly   605 KELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVI 669
            :|:|:|:|:||:||.:||.:||.||.|| ||.|.:||..:||..::||||||||:.|.|..||:.
 Frog   326 REVGILLLYLAVGVSVFSGMAYTAEMDE-DTGFDTIPSCWWWGTVSMTTVGYGDVVPVTVAGKLA 389

  Fly   670 GTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVS 723
            .:.|.:.|:||:||||.||.|.|:.||:.|...|.|::..   ||..||.|.||
 Frog   390 ASGCILGGILVVALPITIIFNKFSHFYRRQKALENAVRNS---DRIPREDSNVS 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 51/106 (48%)
BTB_2 309..408 CDD:280393 46/98 (47%)
Ion_trans 501..700 CDD:278921 99/198 (50%)
Ion_trans_2 613..696 CDD:285168 43/82 (52%)
kcns1XP_002938059.3 BTB_POZ_KCNS1 18..123 CDD:349733 49/104 (47%)
Ion_trans 185..420 CDD:395416 109/236 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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