DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcnb1

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_031750650.1 Gene:kcnb1 / 100489405 XenbaseID:XB-GENE-982937 Length:875 Species:Xenopus tropicalis


Alignment Length:587 Identity:350/587 - (59%)
Similarity:444/587 - (75%) Gaps:53/587 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 GALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTH 342
            |.:.:..|||.:|: ||:|..|.:|||.:.||.:||||:.||||||||:|||.||||:||:|.||
 Frog     3 GWMNKHGSRSTTSL-PPDPMDIIRSKACSRRVKLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTH 66

  Fly   343 EAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLES 407
            |.::|:||||:|.:|||||||||.:|:||||||||||||:::|||.|:||.:|:|||:||:||||
 Frog    67 ECLMEICDDYNLEENEYFFDRHPGAFTSILNFYRTGKLHMMEEMCALSFSQELDYWGIDEIYLES 131

  Fly   408 CCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI 472
            |||.:|||:||.::||:::|||:||:|:.|||....||:.:|.||:||||||:|.||:::|:|||
 Frog   132 CCQARYHQKKEQMNEELKREAETLREREGEEFDNTCCADKRKKLWDLLEKPNSSVAAKILAIISI 196

  Fly   473 LFIVLSTIALTLNTLPQLQHIDN-GTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGG 536
            ||||||||||:|||||.||.||. |...||||||.||||||.|||:||:|||.:||:|||||||.
 Frog   197 LFIVLSTIALSLNTLPDLQGIDEFGQTTDNPQLAHVEAVCIAWFTMEYLLRFLSSPNKWKFFKGP 261

  Fly   537 LNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLR 601
            ||:|||||||||:|::||.|:||:.. |||:||||||:|||||||||||||||||||||||||||
 Frog   262 LNVIDLLAILPYYVTIFLTESNKSVL-QFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLR 325

  Fly   602 NSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALG 666
            .||.|||||:||||||::|||||.:||||||:||||.|||.:||||.|||||||||||||.|.||
 Frog   326 RSYNELGLLILFLAMGIMIFSSLVFFAEKDEEDTKFKSIPASFWWATITMTTVGYGDIYPKTLLG 390

  Fly   667 KVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKD 731
            |::|.:|||.||||||||||||||||:||||.|.|:|||:||||||:||||.|||||   :|:||
 Frog   391 KIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRREALERAKRNGSIVS---MNMKD 452

  Fly   732 AFAKSMDLIDVIVD-----TGK----QTNVVHPK-------------------GKRQSTPNIGRQ 768
            |||:|::|:||:|:     :|:    |.|.:.|.                   .|.|.:|...| 
 Frog   453 AFARSVELMDVVVEKTDDNSGRKDKVQDNHLSPSRWKWTKRTLSETSSNKSFDAKEQGSPEKAR- 516

  Fly   769 TLDVQSAPGH-NLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDA 832
               ..|:|.| |:.|.:....:...|..:              .|.|.::||..::.....|.:|
 Frog   517 ---CSSSPQHLNVQQLEDIYNKMAKTQSQ--------------PVLNSKDSNQPSKPAEELEMEA 564

  Fly   833 VP 834
            :|
 Frog   565 IP 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 75/106 (71%)
BTB_2 309..408 CDD:280393 69/98 (70%)
Ion_trans 501..700 CDD:278921 157/198 (79%)
Ion_trans_2 613..696 CDD:285168 65/82 (79%)
kcnb1XP_031750650.1 BTB_POZ_KCNB2 15..141 CDD:349719 85/126 (67%)
Ion_trans 188..424 CDD:395416 183/236 (78%)
Kv2channel 467..720 CDD:397541 21/118 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 366 1.000 Domainoid score I925
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002877
OrthoInspector 1 1.000 - - otm49184
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.000

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