DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcnf1b

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_005157014.1 Gene:kcnf1b / 100334378 ZFINID:ZDB-GENE-090312-39 Length:484 Species:Danio rerio


Alignment Length:463 Identity:189/463 - (40%)
Similarity:270/463 - (58%) Gaps:47/463 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 LQRT---HSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTT 341
            |.||   |..|.||....|             :::|:||||..:....|.|.|.:||..|..|.|
Zfish     4 LPRTRFAHCNSSSSSDEKE-------------IAVNIGGVRLVLCGDILNRYPDSRLAELVNCPT 55

  Fly   342 H--EAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELY 404
            .  :.|..|||||.....|::|||.|.||..|:..|..|::|:...:|.:.|..::|:|.:|..|
Zfish    56 RSFDVISSLCDDYDPGKREFYFDRDPDSFKCIVEVYYFGEVHMKRGICPICFIKEMEFWKIDLSY 120

  Fly   405 LESCCQHKYHQRKENVHEEMRK--------EAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTS 461
            |:.||:....:::|.:.|...|        |.:....|.|         .:||::|:|:|||.:|
Zfish   121 LDECCKSNLTEKEEELAEIADKVKLILDDLECDPAVSRTE---------RWQKFVWKLMEKPESS 176

  Fly   462 FAARVIAVISILFIVLSTIALTLNTLPQLQHIDN-GTPQDNPQLAMVEAVCITWFTLEYILRFSA 525
            ..||||||:|.|||::|::.:.|.|||.||..|: |...::|.|..:|..||.|||:||:||.::
Zfish   177 LPARVIAVVSFLFILISSVVMCLGTLPDLQVEDSEGNRVEHPSLDAIETACIGWFTVEYVLRLAS 241

  Fly   526 SPDKWKFFKGGLNIIDLLAILPYFVSLFL--LETNKNATDQFQDVRRVVQVFRIMRILRILKLAR 588
            ||:|.:|....:|:||.||:||::|.|.|  |.|   |..:..:|::.||..|||||.||.||||
Zfish   242 SPNKLRFALSFMNMIDFLAVLPFYVVLVLTCLGT---AMMELVNVQQAVQALRIMRIARIFKLAR 303

  Fly   589 HSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTT 653
            ||:|||:|.:.|:.|:||||||::::.:|:.:||:|.|..|:...:|.|.|||::||||.|||||
Zfish   304 HSSGLQTLTYALKRSFKELGLLLMYMGVGIFVFSALGYTMEQSHPETLFRSIPQSFWWAIITMTT 368

  Fly   654 VGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR------EAL 712
            ||||||||.|.||:....:..:|||:.|||||..|:|||..:|..|...|.|.|..      .||
Zfish   369 VGYGDIYPKTTLGRCNAAISFLCGVIAIALPIHPIINNFVIYYNKQKVLETAAKHELELMELRAL 433

  Fly   713 DRAKREGS 720
            :...|..|
Zfish   434 ELTVRSAS 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 39/108 (36%)
BTB_2 309..408 CDD:280393 37/100 (37%)
Ion_trans 501..700 CDD:278921 101/200 (51%)
Ion_trans_2 613..696 CDD:285168 43/82 (52%)
kcnf1bXP_005157014.1 BTB 23..129 CDD:197585 39/105 (37%)
BTB 23..124 CDD:295341 37/100 (37%)
Ion_trans 220..415 CDD:278921 100/197 (51%)
Ion_trans_2 331..398 CDD:285168 35/66 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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