DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcng1

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001096675.1 Gene:kcng1 / 100125206 XenbaseID:XB-GENE-1011042 Length:508 Species:Xenopus tropicalis


Alignment Length:476 Identity:167/476 - (35%)
Similarity:277/476 - (58%) Gaps:31/476 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 PPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLAD 356
            |..:.|..|..........|||||.|:.:.|.|||..|.||||:|:.|:..:.|:.:||||.:..
 Frog    47 PTEDLFKSAHPDDRKHHAIINVGGFRYLLPWTTLEEFPLTRLGQLKLCSNFDEILSICDDYDVTC 111

  Fly   357 NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKE--- 418
            ||:||||:|.:|.:||.|.:.|||.::.|||.|:|.::|.|||::|..||.||:.:|.|:.|   
 Frog   112 NEFFFDRNPGAFRTILTFLQVGKLRLLREMCALSFQEELLYWGIEEDNLEWCCKRRYIQKMEEFA 176

  Fly   419 --NVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIA 481
              |:.||...|.|:..:.::    |.|.....::|.:::|||.:....::.|.:|:||:.::.:.
 Frog   177 ELNLREEELIENENASEPED----ESKLDICMRHLGDMVEKPQSGLPGKIFACLSVLFVTITAVN 237

  Fly   482 LTLNTLPQLQHIDNGTPQDNP--QLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLA 544
            |:::|:|.|:..:........  .:.:||:||:.||:||::|||..:|.|:.|.:..||:||::|
 Frog   238 LSISTMPDLREEEEKGVCSKMCYNIFIVESVCVGWFSLEFLLRFIQAPSKFAFIRRPLNLIDIVA 302

  Fly   545 ILPYFVSLFLLETNK------NATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNS 603
            ||||:::|.:..|:.      :.......|..|:::.|.:|||.:::|||||.|||:||.|.|..
 Frog   303 ILPYYITLVVDNTSDGQKKPGSGNSYLDKVGLVLRILRALRILYVMRLARHSLGLQTLGLTARRC 367

  Fly   604 YKELGLLMLFLAMGVLIFSSLAYFAEKDEKDT-KFVSIPETFWWAGITMTTVGYGDIYPTTALGK 667
            .:|.|||:|||.:.:.:|:.|.|..|.:..|: :|.|||..:|||.||||||||||:.|.:..|:
 Frog   368 TREFGLLLLFLCVAIALFAPLLYLIENEMADSQEFTSIPACYWWAVITMTTVGYGDMVPRSIPGQ 432

  Fly   668 VIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA--LDRAKREGSIVSFHHINLK 730
            |:.....:.|:|::|.|:..|.:.|:..|....:.::.|..|:|  |.:.|.:.|.:|       
 Frog   433 VVALSSILSGILLMAFPVTSIFHTFSRSYIELKQEQERLMCRKAQLLMKTKSQMSSIS------- 490

  Fly   731 DAFAKSMDLIDVIVDTGKQTN 751
                :..|::.....:|.:.|
 Frog   491 ----QGSDMLSESASSGAKAN 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720 50/107 (47%)
Ion_trans 464..700 CDD:459842 90/244 (37%)
kcng1NP_001096675.1 BTB_POZ_KCNG1_2 59..172 CDD:349728 52/112 (46%)
Ion_trans 221..461 CDD:459842 89/239 (37%)

Return to query results.
Submit another query.