DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and kcnc2

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001429226.1 Gene:kcnc2 / 100037377 ZFINID:ZDB-GENE-070410-118 Length:593 Species:Danio rerio


Alignment Length:579 Identity:199/579 - (34%)
Similarity:283/579 - (48%) Gaps:116/579 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCD------DYSLADNEYFFDRHPK 366
            ||.:||||.|||....||:.||.|||..|...:..|.:::...      :||...|||||||||.
Zfish     9 RVILNVGGTRHETYRSTLKTLPGTRLALLASESDLELVLDQLQQVPGFIEYSARSNEYFFDRHPG 73

  Fly   367 SFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE----EMRKE 427
            .|:.:||:|||||||...::|...|.::|.:||:||..:|.||...|.|.::....    ||..:
Zfish    74 VFAYVLNYYRTGKLHCPADVCGPLFEEELSFWGIDETDVEPCCWMTYRQHRDAEEALDVFEMNVD 138

  Fly   428 AESLRQRDEEEFGE--------------GKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLS 478
            .|     :::|:|:              .:...:|..:|.|.:.|.:|.|||.||..|:.||::|
Zfish   139 TE-----EDDEYGKRLGIEDVVSADGTVSRWRRWQPVIWNLFDDPYSSRAARFIAFASLFFIMVS 198

  Fly   479 TIALTLNTLPQLQHIDNGTP----------------QDNPQLAMVEAVCITWFTLEYILRFSASP 527
            .....|.|......|.|.|.                :.:|.|..||.||:.|||.|:::|.:.||
Zfish   199 ITTFCLETHEAFNTIINKTDPLRNETLTDISQQYEIETDPALTYVEGVCVLWFTFEFLVRITFSP 263

  Fly   528 DKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTG 592
            ||.:|.|..|||||.:||||:::.:.|...:..|.   :||...::|.|.:|||||.||.||..|
Zfish   264 DKLEFIKSVLNIIDFVAILPFYLEVGLSGLSSKAA---KDVLGFLRVVRFVRILRIFKLTRHFVG 325

  Fly   593 LQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEK---------DEKDTKFVSIPETFWWAG 648
            |:.||.|||.|..|..||::|||:|||||:::.|:||:         ....|.|.:||..||||.
Zfish   326 LRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGASPNDPTASHHTMFKNIPIGFWWAV 390

  Fly   649 ITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALD 713
            :||||:||||:||.|..|.|:|.:|.:.|||.||:|:|:|||||..:|...|.::|..|:|:   
Zfish   391 VTMTTLGYGDMYPQTWSGMVVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRK--- 452

  Fly   714 RAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGH 778
                       .||                           |:..:..:|...|..|        
Zfish   453 -----------KHI---------------------------PQAVQTGSPLYCRTDL-------- 471

  Fly   779 NLSQTDGNSTEGESTSG------RNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQD 831
               .|..|||:||...|      |:.:.....|....| ::......:..|..|..|||
Zfish   472 ---STACNSTQGELCIGQSRGLERHRSVLSADCSAGSD-ISMSPEERMPMRHSSVREQD 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720 49/111 (44%)
Ion_trans 464..700 CDD:459842 112/260 (43%)
kcnc2NP_001429226.1 None

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