DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant6 and Galnt16

DIOPT Version :9

Sequence 1:NP_001261342.1 Gene:Pgant6 / 38346 FlyBaseID:FBgn0035375 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001094333.1 Gene:Galnt16 / 362760 RGDID:1310202 Length:558 Species:Rattus norvegicus


Alignment Length:494 Identity:187/494 - (37%)
Similarity:269/494 - (54%) Gaps:44/494 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ENGFNALLSDSISVNRSVPDIRHPLCRKKEYVAKLPTVSVIIIFYNEYLSVLMRSVHSLINRSPP 231
            ::.||.|.||.:|.:|.:.|.||..|....|.:.||..||||.|:||..|.|:|:|.|::||:|.
  Rat    88 QHAFNQLESDKLSPDRPIRDTRHYSCPSLSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPA 152

  Fly   232 ELMKEIILVDD-HSDREYLGKELETYIAEHFKWVRVVRLPRRTGLIGARAAGARNATAEVLIFLD 295
            .|::||||||| .||.|      :..:......|:.:|..:|.|||.:|..||..|.|.||.|||
  Rat   153 GLIQEIILVDDFSSDPE------DCLLLTRIPKVKCLRNDKREGLIRSRVRGADVAGASVLTFLD 211

  Fly   296 SHVEANYNWLPPLLEPIALNKRTAVCPFIDVIDHTNFHYRAQDEGARGAFDWEFFYK--RLPLLP 358
            ||.|.|..||.|:|:.:..:....|.|.||||...||.|.|.....||.|||...:|  ::||..
  Rat   212 SHCEVNVEWLQPMLQRVMEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQ 276

  Fly   359 EDLK-HPADPFKSPIMAGGLFAISREFFWELGGYDEGLDIWGGEQYELSFKIWMCGGEMYDAPCS 422
            :..: .|..|.::|::|||:|.|.:.:|..||.||..:||||||.:||||::|||||.:...|||
  Rat   277 KMTRTDPTKPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCS 341

  Fly   423 RIGHIYRGPRNHQPSPRKGDYLH--KNYKRVAEVWMDEYKNYLY-SHGDGLYESVDPGDLTEQKA 484
            |:||::|  :.|..:..:|:.|.  :|.||.|||||||||.|.| :....:.::.  |.:..:..
  Rat   342 RVGHVFR--KRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGKAF--GSVATRIE 402

  Fly   485 IRTKLNCKSFKWFMEEVAFDLMKTYPPVDPPSYAMGALQNVGNQNL-CLDTLGRKKHNK--MGMY 546
            .|.|::||||:|::|.|       ||.:..|  ....|..|..|.: ||::.|:.....  :||.
  Rat   403 QRKKMDCKSFRWYLENV-------YPELTVP--VKEVLPGVIKQGVNCLESQGQNTAGDLLLGMG 458

  Fly   547 ACADNIKTPQRTQFWELSWKRDLRLRRKKECL---DVQIWDANAPVWLWDCHSQGGNQYWYYDYR 608
            .|..:.|:|...|.|..|   |..::::.:||   ...:....:||.|..|:.:.|.|.|    |
  Rat   459 ICRGSAKSPPPAQAWLFS---DHLIQQQGKCLAATSTLMSSPGSPVVLQSCNPKEGKQKW----R 516

  Fly   609 HKQ--LKHGTEGRRCLELLPFSQEVVANKCDTDNRFQQW 645
            .|.  ::|...| .|||..|  .::|.|||..|.:.|||
  Rat   517 RKGSFIQHSVSG-LCLETKP--AQLVTNKCQADAQAQQW 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant6NP_001261342.1 BcsA 199..>413 CDD:224136 95/217 (44%)
pp-GalNAc-T 205..502 CDD:133004 129/303 (43%)
RICIN 520..647 CDD:238092 40/134 (30%)
Ricin_B_lectin 520..645 CDD:279046 38/132 (29%)
Galnt16NP_001094333.1 pp-GalNAc-T 126..420 CDD:133004 130/310 (42%)
WcaA 126..>222 CDD:223539 47/101 (47%)
Ricin_B_lectin 441..543 CDD:279046 31/111 (28%)
RICIN 441..543 CDD:238092 31/111 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345963
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.