DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant6 and galnt5

DIOPT Version :9

Sequence 1:NP_001261342.1 Gene:Pgant6 / 38346 FlyBaseID:FBgn0035375 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_002667267.4 Gene:galnt5 / 100334784 -ID:- Length:768 Species:Danio rerio


Alignment Length:578 Identity:198/578 - (34%)
Similarity:282/578 - (48%) Gaps:96/578 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 QQPQEELQMAAPADASVKKDWH------DYTFMEKDAKRVGLGEGGKASTLDDESQRDLEKRMSL 166
            |.|.||.....|:.:..:...|      |.|...:|...|  |:.|:.:.:....:.:..:|.| 
Zfish   244 QDPAEEALRVLPSTSVKRSGGHHKVKALDVTDRPRDPHAV--GQFGQPARVPKNEELESRRRWS- 305

  Fly   167 ENGFNALLSDSISVNRSVPDIRHPLCRKKEYVAKLPTVSVIIIFYNEYLSVLMRSVHSLINRSPP 231
            |..||..||:.|.::|::||.|...|.:......||:.|||..|.:|..|.|:|||||::|||||
Zfish   306 EGFFNVFLSEQIPIDRAIPDTRPQTCSESLVHDDLPSTSVIFCFVDEVWSTLLRSVHSVLNRSPP 370

  Fly   232 ELMKEIILVDDHSDREYLGKELETYIAEHFKWVRVVRLPRRTGLIGARAAGARNATAEVLIFLDS 296
            :|:||||||||.|.::||.::|:.|::: |..||::.|..|.|||.||.|||..||.|||.||||
Zfish   371 QLLKEIILVDDCSTKDYLKEQLDVYMSQ-FPKVRIIHLKERQGLIRARMAGAAAATGEVLTFLDS 434

  Fly   297 HVEANYNWLPPLLEPIALNKRTAVCPFIDVIDHTNFHYRAQDEGARGAFDWE--FFYKRLP--LL 357
            |:|.|..||.||||.|.|::|...||.||||:..:..|...|...||.|.|.  |.:..||  .:
Zfish   435 HIECNVGWLEPLLERIYLDRRKVPCPVIDVINDKDMSYMLVDNFQRGIFKWPLVFGWSALPEEYI 499

  Fly   358 PEDLKHPADPFK-------SPIM------AGGLFAISREFFWELGGYDEGLDIWGGEQYELSFKI 409
            .::....:||.:       |.|:      :|.:|.                         ..|:|
Zfish   500 QKNQIKDSDPIRIACCFIHSHILHNNRKKSGNVFL-------------------------FVFQI 539

  Fly   410 WMCGGEMYDAPCSRIGHIYRGPRNHQPSPRKGDYLHKNYKRVAEVWMDEYKNYLYSHGDGLYESV 474
            ||||||:...||||:|||:|....::.:..:...:.:|..||||||:||||...|.||   |:.:
Zfish   540 WMCGGEIEIIPCSRVGHIFRSDNPYKFTKDRVKTVERNLARVAEVWLDEYKEVFYGHG---YQHL 601

  Fly   475 ------DPGDLTEQKAIRTKLNCKSFKWFMEEVAFDLMKTYPPVDPPSY-AMGALQNVGNQNLCL 532
                  |.|:||||..:|.||.||||||::|.|       ||.:|.|.. |.|.:.|||.:. ||
Zfish   602 LDKNVTDIGNLTEQIQLREKLKCKSFKWYLENV-------YPDLDTPVVKAEGLIFNVGTRK-CL 658

  Fly   533 DTLGRKKHNKMGMYACADNIKTPQRTQFWELSWKRDLRLRRKKECLDVQIWDANAPVWLWDCHSQ 597
            ..    ::....:..|    ....::|::..:|.|  .||:...||..|    ...:.:..|.:.
Zfish   659 IF----QNESFSLTKC----DLTNKSQYFTFTWLR--LLRQNTSCLAPQ----ETQLTMEPCDNT 709

  Fly   598 GGNQYWYYDYRHKQLKHGTEGRR--------CLELLPFSQEVVANKCDTDNRFQQWNF 647
            ..:..|.    ||..|..||...        |||....:..|....||..:.||:|.|
Zfish   710 KPHLRWI----HKSGKALTEHLMAEVYSQPICLEAGIKADGVFLKGCDRFSTFQKWQF 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant6NP_001261342.1 BcsA 199..>413 CDD:224136 92/230 (40%)
pp-GalNAc-T 205..502 CDD:133004 133/319 (42%)
RICIN 520..647 CDD:238092 31/134 (23%)
Ricin_B_lectin 520..645 CDD:279046 30/132 (23%)
galnt5XP_002667267.4 Glyco_tranf_GTA_type 344..635 CDD:325014 134/326 (41%)
Ricin_B_lectin 647..761 CDD:306998 30/132 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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