DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mrtf and mrtfb

DIOPT Version :9

Sequence 1:NP_001137879.3 Gene:Mrtf / 38338 FlyBaseID:FBgn0052296 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_012826015.1 Gene:mrtfb / 780107 XenbaseID:XB-GENE-487634 Length:1079 Species:Xenopus tropicalis


Alignment Length:1454 Identity:355/1454 - (24%)
Similarity:534/1454 - (36%) Gaps:499/1454 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 HEAYDDMSEGEQRLHATFLGSSDDGNNSDCYDARQSPPKAIVDSSPLQPAMDKNKESLKVKLMVR 352
            |....||.|....|.:  |.||.. :.:..:|.::...:::....||:    :.|..|:::|..|
 Frog     3 HHMAQDMEEEPGSLLS--LASSPQ-SEAVAHDFQELSLQSVQQLPPLK----ERKNVLQLRLQQR 60

  Fly   353 RPHSQLVEQGIIPSLKTSPAIHEQCKQLERAKTSDLLKAKIQQRPNREDLERLHILEEDECHIDP 417
            |...|||:|||:|.||:..|.|||.|.||||:|.:.||.||:.||:|.:|.|:|||||...  :|
 Frog    61 RTREQLVDQGIMPPLKSPAAFHEQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETLA--EP 123

  Fly   418 SLAEKQRMLKKARLADQLNSQIQHRPGPLELIKKNILHTEKPIEKIVKEGL-VSFKATSEGLLTR 481
            ||...|..||:|||||.||.:|..|||||||::||||    |::..|||.: ||.....|.|.| 
 Frog   124 SLQATQLKLKRARLADDLNEKIAQRPGPLELVEKNIL----PVDLSVKEAITVSQTNFPENLDT- 183

  Fly   482 PQHPHSYVTFDDDS---LSSESDTRQTPPRLDEAMVATSSSPTDVLQAAAASAGIVTMALTMPTA 543
                   ::||:||   ||.|....|..                  |.:|||.|      .:.|:
 Frog   184 -------LSFDEDSSDALSPEQPASQES------------------QGSAASPG------EIKTS 217

  Fly   544 GQLVVTSPQILPQQQQPKAIVVPAPVPPPPPPPPPLPMASIIKVKQETANLYEELCQSVTGTTAS 608
            |.   :||                                   :...|..     ||    |.:|
 Frog   218 GS---SSP-----------------------------------ISNTTIQ-----CQ----TVSS 235

  Fly   609 PVNHLYSPCSLASSTSTLSPLSSIASPPPPPMTTTRLHLAPVSVKSDAPGKDKNRKKSKSKPVSK 673
            |:...:.|...|..| |.|||||....|.|.:..          ::.:...:|.|.|....|..:
 Frog   236 PLPDFFKPSPTADLT-TRSPLSSSVCKPGPALIK----------QTQSKHAEKPRSKKSKDPKPR 289

  Fly   674 ARTIKFHEYKGPPSAAGQKQDQTQPEETSYQLMLEQQNCLLKFLENLNKN------QSIIPAPSA 732
            .:.:|:|:|. ||...|:|.:...  :::|..:|:||...|: |:.|::.      |.|:|||  
 Frog   290 VKKLKYHQYI-PPDQKGEKVEAEM--DSNYARLLQQQQLFLQ-LQILSQQQQHYNFQKILPAP-- 348

  Fly   733 PGVMLPAAPGATNNSITVTTKTVPALASQSAPAPAPISLPNTISITSSSGGAPLNFGDATMLTPT 797
                                  :.:|..|           |:|:.|:|:..|.:           
 Frog   349 ----------------------LKSLKKQ-----------NSINTTTSNVNASI----------- 369

  Fly   798 PAATPTPPTLSLIAAPQQQLQLHQQHQQLHQPTPVQHPPPLPSPALSVSSSIPPSPATSYAESTT 862
                           |..|..:.:|:.     .|.:...||||                      
 Frog   370 ---------------PSVQCSVSRQNS-----VPSKKTGPLPS---------------------- 392

  Fly   863 SSITDLARLEKMKVSDLKQHLKRRNLPVSGPKPHLIERLKPYLPLEPLDSNVTPAPTSNNSNT-- 925
                   .|:.|||::||..||.|.|||||.|..|||||||:   :...||.. ||.|.|..|  
 Frog   393 -------NLDDMKVAELKMELKLRGLPVSGTKMDLIERLKPF---QDFSSNGV-APNSGNIVTIA 446

  Fly   926 TPEVITISDA-MDTSNCGLLEQPPPVTMLVSDASM-----------------------------E 960
            |....|..|| :..|...|:....|...:.||||:                             .
 Frog   447 TTACSTTEDATVVFSTSALMNSCSPTPSVSSDASILSVGNNQTALDGINSPLPMSPAPSEQSNFS 511

  Fly   961 HEQMDVVQ-----------QQMDNTHPMTLQTILPPQPQTATI-ILTNEEL--------LREQQR 1005
            .|..::..           .|..||.|  |:.||......||. ..||.||        |:|:::
 Frog   512 SEDTNITDTFAEIMTMMSPSQFMNTSP--LKVILNEDSMGATNGNTTNMELDAVEKDRKLQEKEK 574

  Fly  1006 KIDELQRQLQRSQQELQKI-RQRQQQQQHQQQQTVTAQVVNALPSQQITLITTTSNGPQQTLTVM 1069
            :|::|:|:|::.|:.::.: :|.:.:::.||||..                      |...|.|.
 Frog   575 QIEDLKRKLEQEQKLVEVLKKQLELEKRGQQQQPC----------------------PNVLLKVE 617

  Fly  1070 PQQVEKNFPAKVTVKATGGNSNHKVNGLQQQGSAAKKPASSNSNSNSNISSSNPPPINQKMVVKQ 1134
            |    |:|..::..:....:..:....|...|....:|.:  :..:.||.::|      .:|:|.
 Frog   618 P----KHFNLQIKEETAAPDCQNAKQSLVSSGQIIGQPTA--ATISQNIIANN------ALVIKH 670

  Fly  1135 QLE-AKIQKQKAAAAAAAQQQQQQQQQQQQQQQQQALQQQQQQQQQQQQVRLLTQKTQTVFIPFN 1198
            ::. ||...|...         ||.....|:..|.|:..|.|        .||..:|..:.:|.:
 Frog   671 EVPLAKSDHQNVI---------QQFYVTSQRPPQTAVVAQPQ--------ALLATQTAQLLLPVS 718

  Fly  1199 ----NNNHINNASAKT-TTKKSNVPANNTNTTTATMMQAAK-PAAVAAAAASPGNQHHNNLGLLW 1257
                |...::...|:. |...:..|.:.|..||:.:....| ||.:   |.....||      |.
 Frog   719 IKAPNGVQLSMVQAQPHTVSPAPTPLSTTAATTSLVQAPQKQPAPL---AQDKFTQH------LL 774

  Fly  1258 NEGNQTILLLGLNDQHMTAHTLGNI-------------SLTATTTTTAAPPAATPVAASTIAPPK 1309
            |: ||.|..|      ..:.|.||:             |.:|:.:..|.|...|.:||....|  
 Frog   775 NQ-NQQIRKL------CPSATSGNVFSYPQNPVIAVPQSFSASLSANAQPQRNTQIAAMQNGP-- 830

  Fly  1310 KILNGHQRTNSLPSIVFPIETKSIITQQQLQQLQQQQQQQQQFQPVQQPKQQQLNQVDIKPAPA- 1373
                                       ..||:......|.|||...|.|         :...|. 
 Frog   831 ---------------------------TSLQEESPTPPQPQQFIVQQHP---------VFSGPTT 859

  Fly  1374 ---PPPQYEEATKQLAASKAAALNGLLPLVKIKEEPVQSPAPSAAPLPQTAPLCKRKTASIKSEQ 1435
               .||:||||.||                 .:..|...|..|.|                .|:|
 Frog   860 KSKDPPRYEEAIKQ-----------------ARNNPASQPEVSNA----------------HSQQ 891

  Fly  1436 VSDVLDILIKQGELPESAALEPITPLTPLPELSMFNGATPTTAAGGASIVPLVPKLETPVTPVQN 1500
            :.|:.|||||.||         |:||  :.|.|..:...|.||  ..:.:|:...:..|  |.| 
 Frog   892 MDDLFDILIKSGE---------ISPL--IKEPSPISKMRPVTA--NVTTMPVNTVVSRP--PPQ- 940

  Fly  1501 LDVAMDTNVQHVGFASNQAPNHVFIESIDMASPLQTDSSAIDAESVAKTLDIFLEQHHATPPPST 1565
                                       |.:|.||..:|:...:.|:...|:.||:        .|
 Frog   941 ---------------------------IHVAPPLTLESTNSLSVSLESQLEAFLD--------GT 970

  Fly  1566 PPKSCHSGSEKPNSPDAKLNHFDEYELLELMSQQLEMDMGDDSSGYCHASAAKSSNN-----NGN 1625
            .|      ||. |.|..:.|. |:.|...|: ..|..|:..:|....|.||...:::     |..
 Frog   971 LP------SEN-NIPHLESNS-DDRETFSLI-DDLNNDLLQNSGMLDHDSAPMETSDTPFTANSC 1026

  Fly  1626 LRRDLNPSLQPSINELLDASSPDN 1649
            |..||..:...:: |.||.:.|::
 Frog  1027 LSLDLADANLDNM-EWLDLTMPNS 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MrtfNP_001137879.3 RPEL 387..412 CDD:128947 14/24 (58%)
RPEL 433..458 CDD:128947 15/24 (63%)
SAP 871..905 CDD:280251 22/33 (67%)
mrtfbXP_012826015.1 RPEL 52..76 CDD:421809 11/23 (48%)
RPEL 96..119 CDD:397053 13/22 (59%)
RPEL 141..163 CDD:397053 15/25 (60%)
SAP 394..427 CDD:396567 21/32 (66%)
DUF460 <563..>602 CDD:421465 8/38 (21%)
PHA03247 <693..936 CDD:223021 78/350 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 164 1.000 Inparanoid score I4076
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001082
OrthoInspector 1 1.000 - - otm48223
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4963
SonicParanoid 1 1.000 - - X2343
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.080

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