DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fife and bbg

DIOPT Version :9

Sequence 1:NP_001261340.1 Gene:Fife / 38337 FlyBaseID:FBgn0264606 Length:1314 Species:Drosophila melanogaster
Sequence 2:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster


Alignment Length:1618 Identity:314/1618 - (19%)
Similarity:467/1618 - (28%) Gaps:636/1618 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ATDEQTSERQQHAADSGGGASQTGALNKMKATISSSLLTVTDK---------------VNKMSPR 64
            ||.|....::.|..||...|..|..:..:...:...|..|..|               :.|..|:
  Fly  1266 ATKEVIISKEDHKNDSALPAVSTTKVEIISPPLEDDLGYVLHKHIIFPQEKVKTAPTPLPKPKPK 1330

  Fly    65 PSLVPTDAD------TSGSYGSPSYQSQQQQQQDYGSSLNNNNNNSSGGGTATTGGGGG------ 117
            |. |||:..      |......|...|::.:.            :.|||....|...|.      
  Fly  1331 PP-VPTNKPKMPVNLTKPKSAPPPVPSKRSEL------------SGSGGKPTPTQRRGSLETAQP 1382

  Fly   118 ---------GAAAKQEPGRR---AGACRVCLKSFKPDDYHKTC--------------FECQQRVC 156
                     |...:.||.:.   .....|.|.:..|:....|.              ||..|  .
  Fly  1383 PKPLERIIVGVEQRDEPEKPQPIINLASVDLPNVAPNSKQATVETTPVVEMPPDELQFESHQ--L 1445

  Fly   157 EDCASYSKLDEHEDATMWRCSVCRRKMASRVCIP------------QDSTDSMLDV--------- 200
            .|.....| |.|:::.    .:.....:|.|..|            .||..|:::|         
  Fly  1446 PDDGEKEK-DLHQESN----DLLSGSSSSSVTTPITTPILVSATSSMDSVQSVIEVVNGMPIISN 1505

  Fly   201 -----------------------------PVLE----ALQRRHSDAKLGS--------------- 217
                                         ||.|    .|.|.| ::.||:               
  Fly  1506 QQTDDDDIDEVAAYDDGMHLEAEGTKDVRPVQEVTTLTLDREH-ESDLGTLSNHHSNISSISGIN 1569

  Fly   218 -----------STQTLAPSNGAALAPPRSPEL-------------------RRHSDVSPASLKEL 252
                       |:.....|..||...|.:|::                   ..|......:.|:|
  Fly  1570 ASSNIPAATLISSSIKKTSTEAATTKPAAPQIPGKMELLSSNTGTTTTTTTATHHLHQATTTKQL 1634

  Fly   253 ERQLKGGRSMAPSRSNSPPRGEGPDGQPPFGAPLSRMQSRRGSRVARQHSYDDDMKTGPVGGSMG 317
            ..|.....:..|:.|..||  :|.:..|.|..||.            .||:              
  Fly  1635 LVQDYLSYASPPTYSRLPP--DGHEFPPNFSEPLI------------MHSH-------------- 1671

  Fly   318 GGGPALGLGADGAGLGIPTMPRRKSAYDVFAPGLTQGGATPATQLQRSPGEGGIMPPIQLPGSRR 382
                             |.....:.:|::...|..:..|.|.      |..|   ||..:|   |
  Fly  1672 -----------------PLKVTTELSYEIQKGGKDESSAPPL------PKTG---PPATVP---R 1707

  Fly   383 PSFR-------VPHPS--EDIQNDDSPGSPDKGSPVLTVDDDRRMRRRGSQLPD-IAMLQNRGAL 437
            ..:|       .|.||  .|.|...|.|:|.|.|      |.|:..:....:.| |||..:...|
  Fly  1708 KVYRQDLVINVEPAPSLTRDYQRSLSGGTPRKPS------DWRKDEKSEKSVRDKIAMFSSNNEL 1766

  Fly   438 PAVPPSSIPPPM-ASFT-------GPNLED----LEAPRRQT-SMDGEAIRIV------------ 477
            .|:||:....|: :|||       ..||.|    ..||..:| :|..|.:..|            
  Fly  1767 DAIPPAPATAPISSSFTRKPLNRSSENLLDSCSSSSAPSLKTRAMSVENLNDVQRQYQLAKQLPQ 1831

  Fly   478 IHDVDS---------GPICASKRRIILRRDPTDKAHRTRGFGMRVVGG--KTGADGRLFAYIVWT 531
            :|..||         .|..||..|         ::|          ||  .:|.:.|    |.::
  Fly  1832 LHVADSMYSLNTATPTPSYASLPR---------RSH----------GGSYSSGVERR----ISFS 1873

  Fly   532 VPGG------AAEKNGLQQGDKIL-EWNGMSLIDRS--FEEVCSIMDRTGDVVELLVEHATDF-- 585
            ..||      ||..|.|:|..:.| :..|:.:.:|.  .|.:..:.:....|.....|.:||.  
  Fly  1874 GEGGDAANRKAAITNILEQRRRSLSKLRGLVIPERPQLLEPILDLPEIKSQVKAASGEDSTDSGL 1938

  Fly   586 ---------RMCDLFDENLPPGNAGGQSGPRRS-----GDGPVGLGLIAEP--ETTTDKSPASPT 634
                     |.|.|        .|||.:...||     ...|:...|...|  ...|..:|..|.
  Fly  1939 GESHRSTVNRNCQL--------GAGGAANNYRSILNTNQRRPLEQQLSQPPAKPPRTSLTPLQPR 1995

  Fly   635 RRKLPKTPEQIAREKLVTGRVQIQVWYHAERSELVVSLMAGDDLAPRDEAYGH----GNLPEAYA 695
            ...:|..|..:.:|                              :..|..:.|    ...||.:|
  Fly  1996 SMMIPPPPPPLDQE------------------------------SDTDSVFSHTARVATPPEKFA 2030

  Fly   696 KVRILPKCGDGSVQQTEVSRPTQNPIWNATLTFGHVKADTLMVRYIDIQLWDLVPHTESIFLGEC 760
            ..|.|.       .:|..|..:.|   .:|||.|......                      ..|
  Fly  2031 LTRTLS-------SETNTSIASSN---TSTLTSGSSAGSQ----------------------ASC 2063

  Fly   761 S-------IELQQAFLDDQAIWCRLEDTKGLRGISISKSPSVSPRGSIAAGAGAPSGDVTRLLRR 818
            |       ::|.:..|..|.|          .|.::    ::|.|.||.|.|...|.        
  Fly  2064 SSLGSTPAVDLTRRVLKSQVI----------NGEAV----ALSSRKSILASAKCRSA-------- 2106

  Fly   819 DYNMQRSNSDDVDSI-GDGTSLLHPDHAWIAGSRRGSSQSETMEVEVYQLGKDF----------- 871
               ..|...:|.||. |:..||        |..|.....|..::.:..||||..           
  Fly  2107 ---KSRGQEEDNDSTDGEACSL--------ANRRMKPISSYKLQQQQIQLGKQLVVDKLINVAAY 2160

  Fly   872 ----SRSLPGSRRSSFQDAEKNRLEEDAMATPP--TSYLVGRRRSSVARRDPDEILKSLKAVRGE 930
                |.:...||||.               ||.  ::..:...|.:..:.||::..|        
  Fly  2161 VELTSDTDDSSRRSD---------------TPAKISAMFIDEERKASFKGDPNQQAK-------- 2202

  Fly   931 LGRTMSLGTEQHKRMGSRRASRVGLPS-GPSSRKSSVLDLSQQHQQQLQQLQQLQLQQQQYLQQQ 994
                  :..||.|.|        .||. .||:::.   .|.||...:|::..:.....|...|..
  Fly  2203 ------VKVEQVKPM--------VLPMLLPSAKRE---PLKQQTTAELREKFERSAAAQAQTQNH 2250

  Fly   995 LPMGVGNADTSPPSEDEDKRYRPRWKGSVSQLPPQSPKQALSRLKQAASASNVAQDTQRQGQLLT 1059
            .|:                      ...|:|.|......:|..|  |:|:|.|:..||   .:.|
  Fly  2251 SPV----------------------IHKVTQKPHHERFSSLDSL--ASSSSGVSSTTQ---NVST 2288

  Fly  1060 TNPLQQRKSSMFQLGESQ--------------ASPPTTTTTH----LQRK------------GSM 1094
            |........|...||.:|              |.||..|...    |||:            ||.
  Fly  2289 TQETATEFGSFSSLGSNQSLITAQDVQQIVEEADPPLKTPEAFIIVLQRENPESSIGITLAGGSD 2353

  Fly  1095 YVAKVTETPPH----GTPTRK-------------------GSVYQRSVVGLSVDSPGADSPQRKQ 1136
            |.||  |...|    .||..|                   |..::.|:..|.       :|:.:.
  Fly  2354 YEAK--EITIHKILSNTPAAKDGRLKKGDRILAVNGMSMRGLTHRESISVLK-------TPRPEV 2409

  Fly  1137 SVVKTLSGSYVNICPLTGGESSYGLKLGPSQIHPKGYRLTTARYGELKMGFLKIKGNVEVELICA 1201
            .:|.|.|.|.| :..||...||.|   ..|.::.|...|...|    |..:.|...:::::|...
  Fly  2410 VLVVTRSESLV-VKALTKKRSSLG---SLSSLNEKPTELDYER----KRNYHKASRSLDLDLDLV 2466

  Fly  1202 RNIVNED--CETP------PDTYVKCYIKD------GDRLRHK---------KKTRVVRHAAEP- 1242
            .|...|.  ..||      |......:.:|      |.|.|.:         ..:.::..|||. 
  Fly  2467 SNEAGESPVATTPSTGSVSPPQPASLHDEDAEATIAGIRARRQLSRGDAAKLSTSELLERAAEAR 2531

  Fly  1243 -LYRQTIKYQSSDVF----GRNIVIMVWQRC-VGFEHNQG----LGGTEVNLDKLSIG 1290
             .....|:.|:.|..    |...|.:|...| :||....|    ||...:.:.|:.:|
  Fly  2532 NAIAAEIRAQAEDAAASGGGARCVEIVKDSCGLGFSIEGGFDSPLGNRPLIVKKVFMG 2589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FifeNP_001261340.1 FYVE_BSN_PCLO 130..187 CDD:277290 12/70 (17%)
PDZ_signaling 491..580 CDD:238492 19/99 (19%)
DegQ <526..577 CDD:223343 13/59 (22%)
C2A_RIM1alpha 651..779 CDD:175997 20/138 (14%)
C2 1163..1304 CDD:301316 33/162 (20%)
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375
PDZ_signaling 2331..2413 CDD:238492 17/90 (19%)
PDZ_signaling 2553..2634 CDD:238492 10/37 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.