DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxn and tpo

DIOPT Version :9

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:XP_021322945.1 Gene:tpo / 569363 ZFINID:ZDB-GENE-110519-2 Length:672 Species:Danio rerio


Alignment Length:699 Identity:277/699 - (39%)
Similarity:400/699 - (57%) Gaps:58/699 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 AINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNI--------RKHVQ 727
            |.|.|...|..:      |:..::.|:.|.|:.|.:|::|:|||::.||..:        |:.||
Zfish     5 AFNKTAQRLDHH------PSPSQMYRLSRRPSAETQQVSRSAEIFQTTLTLLKEKSSRRQRRSVQ 63

  Fly   728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEHREMPNC-TDMCFHSRYRSIDGTCNNLQHPT 791
            ..:.|::|:.|             .:|.||||....:...| ||    ..||||.|.|||.::|.
Zfish    64 ISEVLSVKAVE-------------RIANLSGCPRTFQSTTCATD----EEYRSITGVCNNRKNPF 111

  Fly   792 WGASLTAFRRLAPPIYENGFSMPVGWTKGMLYSGHAKPSARLVSTSLV--ATKEITPDARITHMV 854
            ||::.|...|..|..||:|.:.|.||..|..|:|...|..|.||..::  ::..:..|...:.|:
Zfish   112 WGSANTGLARWLPAEYEDGENQPKGWNAGRQYNGFQLPPVREVSKRIIRSSSSALQEDRDYSQML 176

  Fly   855 MQWGQFLDHDLDHAIPSVSSESW-DGIDCKKSCEMAPPCYPIEVPPNDPRVRNRRCIDVVRSSAI 918
            :.|||::|||:.....|.|..|: .|.||.::|..|.||:||::..:||..||..|:...|||..
Zfish   177 VDWGQYIDHDISFTPQSSSQTSFTPGFDCLRTCVSADPCFPIQISRDDPLSRNSSCLPFFRSSPS 241

  Fly   919 CGSGMTSLFFDSVQHREQINQLTSYIDASQVYGYSTAFAQELRNLTSQEGLLRVGVHF-PRQKDM 982
            |    |.|      .|:|:|.:||:||||.|||.|....|.||:.|   |||.|...| ...:..
Zfish   242 C----TGL------QRQQLNSITSFIDASTVYGSSEEQQQILRSST---GLLAVSEEFWDTGRPF 293

  Fly   983 LPFAAPQDGMDCRRN-----LDENTMSCFVSGDIRVNEQVGLLAMHTIWMREHNRIASKLKQINS 1042
            || :.||....|.:.     |.|..:.||.:||.||||.:.|..:||:|||||||:|..|.|||:
Zfish   294 LP-SVPQRPSACLQQPGSPALLEARVECFAAGDSRVNEVLPLAVLHTLWMREHNRLAELLAQINT 357

  Fly  1043 HWDGDTLYQEARKIVGAQMQHITFKQWLPLIIG-ESGMEMMGEYQGYNPQLNPSIANEFATAALR 1106
            ||....:|||.|||:||..|..|.:.::|.:|| ||..|.:|.|:|||..::||::|.|||||.|
Zfish   358 HWGKQRVYQETRKIIGALHQIFTMRDYIPKVIGQESVNEFLGPYEGYNESVDPSVSNVFATAAFR 422

  Fly  1107 FGHTIINPILHRLNETFQPIPQGH-LLLHKAFFAPWRLAYEGGVDPLMRGFLAVPAKLKTPDQNL 1170
            |||..|:|.|.|||::||...:.. |.|.::||:||||..|||:||::|..|:.||.|:..:..:
Zfish   423 FGHVTISPYLRRLNQSFQEDERYETLTLQQSFFSPWRLVREGGLDPVLRALLSAPAVLQDQEHLM 487

  Fly  1171 NTELTEKLFQTAHAVALDLAAINIQRGRDHGMPGYNVYRKLCNLTVAQDFEDLAGEISSAEIRQK 1235
            ..||||:|........|||||:|:|||||||:||||.:|..|.|...:...||...:.|.::.::
Zfish   488 TEELTERLLVLNVPQNLDLAALNLQRGRDHGLPGYNAWRVFCGLDRVESRSDLLKLVGSDDLVKE 552

  Fly  1236 MKELYGHPDNVDVWLGGILEDQVEGGKVGPLFQCLLVEQFRRLRDGDRLYYENPGVFSPEQLTQI 1300
            :.:||||||||||||||:||..:.|.:.||||.||:.:|.::||||||.::.||||||.||..::
Zfish   553 IMDLYGHPDNVDVWLGGLLERPLSGARTGPLFSCLIGKQMKKLRDGDRFWWLNPGVFSAEQRHEL 617

  Fly  1301 KQANFGRVLCDVGDNFDQVTENVFILAKHQGGYKKCEDIIGINLYLWQE 1349
            :..:..||:|| .....:|..:.|..:.:...:..|..:..::|..|:|
Zfish   618 QTHSLSRVICD-NSGLMEVPLDAFRRSSYPEDFHLCGSVPTLDLEAWRE 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 LRR_RI 51..>161 CDD:238064
leucine-rich repeat 54..77 CDD:275380
LRR_8 55..112 CDD:290566
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
LRR_8 124..184 CDD:290566
leucine-rich repeat 126..149 CDD:275380
LRR_4 148..185 CDD:289563
leucine-rich repeat 150..173 CDD:275380
Ig 240..325 CDD:299845
IG_like 242..325 CDD:214653
I-set 366..450 CDD:254352
Ig 384..451 CDD:143165
I-set 458..546 CDD:254352
Ig 472..536 CDD:299845
I-set 553..644 CDD:254352
Ig 570..643 CDD:299845
An_peroxidase 777..1317 CDD:281139 241/550 (44%)
peroxidasin_like 898..1338 CDD:188658 197/447 (44%)
VWC 1465..1523 CDD:278520
tpoXP_021322945.1 An_peroxidase_like 113..665 CDD:326323 236/566 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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