DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxn and slt-1

DIOPT Version :9

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:NP_510437.2 Gene:slt-1 / 181562 WormBaseID:WBGene00004854 Length:1410 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 LRR_RI 51..>161 CDD:238064
leucine-rich repeat 54..77 CDD:275380
LRR_8 55..112 CDD:290566
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
LRR_8 124..184 CDD:290566
leucine-rich repeat 126..149 CDD:275380
LRR_4 148..185 CDD:289563
leucine-rich repeat 150..173 CDD:275380
Ig 240..325 CDD:299845
IG_like 242..325 CDD:214653
I-set 366..450 CDD:254352
Ig 384..451 CDD:143165
I-set 458..546 CDD:254352
Ig 472..536 CDD:299845
I-set 553..644 CDD:254352
Ig 570..643 CDD:299845
An_peroxidase 777..1317 CDD:281139
peroxidasin_like 898..1338 CDD:188658
VWC 1465..1523 CDD:278520
slt-1NP_510437.2 LRRNT 17..47 CDD:214470
leucine-rich repeat 26..45 CDD:275380
LRR_RI <48..195 CDD:238064
LRR_8 48..104 CDD:290566
leucine-rich repeat 48..69 CDD:275380
leucine-rich repeat 70..93 CDD:275380
LRR_8 94..152 CDD:290566
leucine-rich repeat 94..117 CDD:275380
leucine-rich repeat 118..165 CDD:275380
LRR_8 142..196 CDD:290566
leucine-rich repeat 142..163 CDD:275380
leucine-rich repeat 166..284 CDD:275380
LRRCT 195..243 CDD:214507
LRRNT 259..291 CDD:214470
leucine-rich repeat 285..312 CDD:275380
LRR_8 287..347 CDD:290566
LRR_4 311..352 CDD:289563
leucine-rich repeat 313..336 CDD:275380
LRR_8 336..419 CDD:290566
leucine-rich repeat 337..384 CDD:275380
leucine-rich repeat 385..408 CDD:275380
LRRCT 417..466 CDD:214507
LRRNT 484..512 CDD:214470
leucine-rich repeat 494..516 CDD:275380
LRR_RI <514..635 CDD:238064
leucine-rich repeat 517..538 CDD:275380
LRR_8 538..597 CDD:290566
leucine-rich repeat 539..562 CDD:275380
leucine-rich repeat 563..586 CDD:275380
leucine-rich repeat 587..610 CDD:275380
leucine-rich repeat 611..675 CDD:275380
leucine-rich repeat 676..729 CDD:275380
LRRNT 677..708 CDD:214470
LRR_8 729..788 CDD:290566
LRR_4 729..771 CDD:289563
leucine-rich repeat 730..753 CDD:275380
leucine-rich repeat 754..777 CDD:275380
leucine-rich repeat 778..799 CDD:275380
EGF_CA 909..945 CDD:238011
EGF_CA 947..983 CDD:238011
EGF_CA <994..1023 CDD:238011
EGF_CA 1025..1061 CDD:238011
LamG 1133..1268 CDD:214598
CT 1334..1405 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.