DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxn and epx

DIOPT Version :9

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:XP_002933592.2 Gene:epx / 100496213 XenbaseID:XB-GENE-6039946 Length:716 Species:Xenopus tropicalis


Alignment Length:693 Identity:278/693 - (40%)
Similarity:406/693 - (58%) Gaps:29/693 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   663 EAAKEIDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 727
            ||...:|:|..||..|| ..|..|...:..:|:..|:.|...:|...|||:....||..:.|.:|
 Frog    42 EAKHLVDIAYKNTRLML-KERLRKRTVSASDLMAYFKQPVAGSRNAIRAADYMGTTLQLLSKKLQ 105

  Fly   728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEHREMPNCTDMCFHSRYRSIDGTCNNLQHPTW 792
                 ......:...|||:...:..:.:|:|| .::.:|..   |..|.||:|.|.|||.::|..
 Frog   106 -----PFHHRPFNITDLLTETQIDTIYKLTGC-AYQHLPRA---CQESTYRTITGECNNRKNPIL 161

  Fly   793 GASLTAFRRLAPPIYENGFSMPVGWTKGMLYSGHAKPSARLVSTSLV--ATKEITPDARITHMVM 855
            |||.|.|.||.|.:||:|.|:|.|||:.:..:|...|.||.||..:|  ..:.:|.|.....:.|
 Frog   162 GASNTGFTRLLPAVYEDGVSLPRGWTENLPINGFPLPLARAVSNEIVRFPNENLTLDQGRALIFM 226

  Fly   856 QWGQFLDHDLDHAIPSVSSES--WDGIDCKKSCEMAPPCYPIEVPPNDPRVRNRR-CIDVVRSSA 917
            ||||:.|||||.: |...:.|  .:||||..||...|||:|:::||||||:||:. ||.:.|||.
 Frog   227 QWGQWTDHDLDLS-PETPARSTFLEGIDCDTSCAKQPPCFPLKIPPNDPRIRNQSDCIPLFRSSP 290

  Fly   918 ICGSGMTSLFFDSVQHREQINQLTSYIDASQVYGYSTAFAQELRNLTSQEGLLRVGVHF-PRQKD 981
            :|..|...        |||||.|||::|.|||||.....|.:|||.|:|.||:.:...| .....
 Frog   291 VCTPGSPV--------REQINVLTSFLDGSQVYGSDWPLAVKLRNNTNQLGLMAINQKFTDNGLP 347

  Fly   982 MLPFAAPQDGMDCRRNLDENTMSCFVSGDIRVNEQVGLLAMHTIWMREHNRIASKLKQINSHWDG 1046
            .|||...::.. |......:.:.||:.||.||:||.||.|.||:::|.||.||::|:::|..|.|
 Frog   348 FLPFETAEEDF-CVLTNRSSGIPCFLGGDPRVSEQPGLTAFHTLFVRAHNNIATRLRELNPRWSG 411

  Fly  1047 DTLYQEARKIVGAQMQHITFKQWLPLIIGESGMEMMGEYQGYNPQLNPSIANEFATAALRFGHTI 1111
            :|||||||||||..:|.||:|.||||::|.....::..|:.||..::|.:||.| |...|.|||:
 Frog   412 ETLYQEARKIVGGILQKITYKDWLPLLLGSEMATVLPAYRSYNENVDPRVANVF-TVVFRMGHTL 475

  Fly  1112 INPILHRLNETFQPI-PQGHLLLHKAFFAPWRLAYEGGVDPLMRGFLAVPAKLKTPDQNLNTELT 1175
            |.|.::||.:.::|: |:..:.||..||..||:..|||:|||:||.:|..|||...:|.:..||.
 Frog   476 IQPFIYRLADGYRPLNPEPRVPLHMTFFNSWRVVREGGIDPLLRGLMANRAKLNRQNQLVVDELR 540

  Fly  1176 EKLFQTAHAVALDLAAINIQRGRDHGMPGYNVYRKLCNLTVAQDFEDLAGEISSAEIRQKMKELY 1240
            |:||.....:.|||.|||:||||:||:||||.:|:.|.|:..::.::||..:::..:.:|..:||
 Frog   541 ERLFVLFKRIGLDLTAINMQRGREHGLPGYNAWRRFCGLSAPRNVDELAAVLNNRGLAEKFVKLY 605

  Fly  1241 GHPDNVDVWLGGILEDQVEGGKVGPLFQCLLVEQFRRLRDGDRLYYENPGVFSPEQLTQIKQANF 1305
            |.|:|:|:|:||:.|..|..|::|.|..||:..||||.|||||.|||.|.||:..|...|::...
 Frog   606 GTPENIDIWVGGVAESLVRNGRIGKLLTCLIGNQFRRARDGDRFYYEQPTVFTNAQRASIERVTL 670

  Fly  1306 GRVLCDVGDNFDQVTENVFILAKHQGGYKKCEDIIGINLYLWQ 1348
            .||:|| .....:|..|||:..::...:..|..|..::|..|:
 Frog   671 ARVICD-NTKITEVPRNVFLGNQYPRDFFPCSRIPTLDLNPWK 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 LRR_RI 51..>161 CDD:238064
leucine-rich repeat 54..77 CDD:275380
LRR_8 55..112 CDD:290566
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
LRR_8 124..184 CDD:290566
leucine-rich repeat 126..149 CDD:275380
LRR_4 148..185 CDD:289563
leucine-rich repeat 150..173 CDD:275380
Ig 240..325 CDD:299845
IG_like 242..325 CDD:214653
I-set 366..450 CDD:254352
Ig 384..451 CDD:143165
I-set 458..546 CDD:254352
Ig 472..536 CDD:299845
I-set 553..644 CDD:254352
Ig 570..643 CDD:299845
An_peroxidase 777..1317 CDD:281139 240/546 (44%)
peroxidasin_like 898..1338 CDD:188658 190/442 (43%)
VWC 1465..1523 CDD:278520
epxXP_002933592.2 myeloperoxidase_like 288..697 CDD:188656 178/419 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11475
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.110

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