DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxn and ptgs1

DIOPT Version :10

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:XP_031746131.1 Gene:ptgs1 / 100493073 XenbaseID:XB-GENE-995315 Length:607 Species:Xenopus tropicalis


Alignment Length:568 Identity:120/568 - (21%)
Similarity:207/568 - (36%) Gaps:184/568 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   791 TWGA--SLTAFRRLAPPIYENGFSMPVGWTKGMLYSGHAKPSARLVSTSLVATKEITPDARITHM 853
            :|.|  :::.|.|:.||:.:: ...|:| |||.:    ..|.|.|:..:.:..::..||.:.|::
 Frog   149 SWEAYSNVSYFTRVLPPVPDD-CPTPMG-TKGKM----ELPDASLLVETFLKREKFIPDPQGTNL 207

  Fly   854 VMQWGQFLDHDLDHAIPSVSSESWDGIDCKKSCEMAPPCYPIEVPPNDPRVRNRRCIDVVRSSAI 918
            :..:  |..|                                                       
 Frog   208 LFAF--FAQH------------------------------------------------------- 215

  Fly   919 CGSGMTSLFFDSV--QHREQINQLTSYIDASQVYGYSTAFAQELRNLTSQEGLLRVGV------- 974
                .|..||.:.  ..|..|......:|.|.:||.|......||..|  :|.|:..:       
 Frog   216 ----FTHQFFKTYGRMGRGFIKGFGHGVDLSHIYGDSLERQHMLRLFT--DGKLKYQIINGDIYP 274

  Fly   975 --------------HFPRQKDMLPFAAPQDGMDCRRNLDENTMSCFVSGDIRVNEQVGLLAMHTI 1025
                          :.|::|.   ||..|:                |.|.:     .||:...|:
 Frog   275 PTVVEAPVFMIYPDNVPKEKQ---FAVGQE----------------VFGLL-----PGLMMYATL 315

  Fly  1026 WMREHNRIASKLKQINSHWDGDTLYQEARKIVGAQMQHITFKQWLPLIIGESGMEMMGEY--QGY 1088
            |:|||||:...||:.:..||.:.|:|..|.|:        ..:.:.::|.:....:.|.|  ..:
 Frog   316 WLREHNRVCDILKKEHPTWDDEQLFQTTRLIL--------IGETIKIVIEDYVQHLSGYYLKLKF 372

  Fly  1089 NPQLNPSIANEFAT-AALRFGHTIINPILHRLNETFQP-IPQGHLLL-----HKAFFAPWRLAYE 1146
            :|:|...:..::.. .|:.|     |.:.|     :.| ||:...:|     |..|.....:..:
 Frog   373 DPELLFGVQFQYRNRIAVEF-----NQLYH-----WHPLIPEKFQILEDEYSHSRFLYNTSILLD 427

  Fly  1147 GGVDPLMRGFLAVPAKLKTPDQNLNTELTEKL--FQTAHAVALDLAAINIQRGRDHGMPGYNVYR 1209
            .||:.|:..|              ..::..|:  .:..|...|.:||..|:..|...:..:|.||
 Frog   428 YGVEALVESF--------------TKQIAGKIGGGKNHHPGLLKVAAGVIEESRKLRLQPFNEYR 478

  Fly  1210 KLCNLTVAQDFEDLAG-EISSAEIRQKMKELYGHPDNVDVWLGGILEDQVEGGKVGP--LFQCLL 1271
            |...|...:.|:||.| ||.||:    ::||||..|.::.:||.:||      |..|  :|...:
 Frog   479 KRFGLKAYKSFKDLTGEEIMSAQ----LEELYGDIDALEFYLGLLLE------KSNPNSIFGESM 533

  Fly  1272 VE-----QFRRLRDGDRL---YYENPGVFSPEQ-LTQIKQANFGRVLC 1310
            ||     ..:.|. |:.:   .|..|..|..|. ...:|.|...:::|
 Frog   534 VEIGAPFSLKGLM-GNPICSPEYWKPSTFGGETGFNIVKTATIQKLVC 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 leucine-rich repeat 54..77 CDD:275380
LRR <55..>184 CDD:443914
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
leucine-rich repeat 126..149 CDD:275380
leucine-rich repeat 150..173 CDD:275380
Ig_3 235..311 CDD:464046
Ig 366..450 CDD:472250
Ig strand B 384..388 CDD:409544
Ig strand C 397..401 CDD:409544
Ig strand E 420..424 CDD:409544
Ig strand F 434..439 CDD:409544
Ig strand G 447..450 CDD:409544
Ig_3 458..533 CDD:464046
Ig 553..644 CDD:472250
Ig strand B 570..574 CDD:409353
Ig strand C 584..588 CDD:409353
Ig strand E 610..614 CDD:409353
Ig strand F 624..629 CDD:409353
Ig strand G 638..641 CDD:409353
peroxidasin_like 898..1338 CDD:188658 101/459 (22%)
VWC 1465..1523 CDD:278520
ptgs1XP_031746131.1 EGF_CA 44..81 CDD:238011
prostaglandin_endoperoxide_synthase 101..587 CDD:188648 120/568 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.