DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pxn and dcc

DIOPT Version :9

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:XP_004910421.2 Gene:dcc / 100486082 XenbaseID:XB-GENE-852874 Length:1448 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 LRR_RI 51..>161 CDD:238064
leucine-rich repeat 54..77 CDD:275380
LRR_8 55..112 CDD:290566
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
LRR_8 124..184 CDD:290566
leucine-rich repeat 126..149 CDD:275380
LRR_4 148..185 CDD:289563
leucine-rich repeat 150..173 CDD:275380
Ig 240..325 CDD:299845
IG_like 242..325 CDD:214653
I-set 366..450 CDD:254352
Ig 384..451 CDD:143165
I-set 458..546 CDD:254352
Ig 472..536 CDD:299845
I-set 553..644 CDD:254352
Ig 570..643 CDD:299845
An_peroxidase 777..1317 CDD:281139
peroxidasin_like 898..1338 CDD:188658
VWC 1465..1523 CDD:278520
dccXP_004910421.2 IgI_1_Neogenin_like 39..136 CDD:409387
Ig strand B 57..61 CDD:409387
Ig strand C 71..75 CDD:409387
Ig strand E 95..99 CDD:409387
Ig strand F 114..119 CDD:409387
Ig strand G 129..132 CDD:409387
Ig_3 141..216 CDD:404760
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 195..199 CDD:409353
Ig strand F 209..214 CDD:409353
IG 246..327 CDD:214652
Ig 334..417 CDD:416386
Ig strand A 334..337 CDD:409353
Ig strand A' 339..343 CDD:409353
Ig strand B 346..355 CDD:409353
Ig strand C 360..366 CDD:409353
Ig strand C' 368..371 CDD:409353
Ig strand D 376..380 CDD:409353
Ig strand E 384..388 CDD:409353
Ig strand F 396..404 CDD:409353
Ig strand G 407..417 CDD:409353
FN3 429..521 CDD:238020
FN3 528..617 CDD:238020
FN3 622..715 CDD:238020
FN3 726..805 CDD:214495
FN3 848..941 CDD:238020
FN3 948..1043 CDD:238020
Neogenin_C 1150..1446 CDD:399527
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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