DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pxn and si:ch211-66e2.3

DIOPT Version :9

Sequence 1:NP_523891.2 Gene:Pxn / 38326 FlyBaseID:FBgn0011828 Length:1527 Species:Drosophila melanogaster
Sequence 2:NP_001108576.1 Gene:si:ch211-66e2.3 / 100141487 ZFINID:ZDB-GENE-080226-7 Length:315 Species:Danio rerio


Alignment Length:201 Identity:42/201 - (20%)
Similarity:63/201 - (31%) Gaps:49/201 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 GEQVELSCEVTGLPRPQ---ITWMHN---TQELGLEEQAQAEILPSGSLLIRSADTSDMGIYQCI 308
            |.|.||.|:|..:...|   :.|...   ..:....:..::.:..:..||||.....|....:|.
Zfish   123 GNQYELQCDVYNVAPVQKLTVNWYKGETLVDQTSFTDTIKSPVNKTSKLLIRPDRADDGAQIRCE 187

  Fly   309 ARNEMGALRSQPVRLVVNGGNHPLDSPIDARSNQVWADAGTPMHGATPLPSPLPSPPHFTHQPHD 373
            ....:|....||                            .|.:.:.||...:...|  .|....
Zfish   188 VELNLGEEGPQP----------------------------PPTNTSEPL
RITVYYKP--KHSNST 222

  Fly   374 QIVALHGSGHVLLDCAASGWPQPDIQWFVNGRQLLQSTPSLQLQANGSLILLQPNQLSAGTYRCE 438
            :|::  .|..|.|:|.....|.....|.           |..|....|..::|.:.||.|.|.|.
Zfish   223 EIIS--WSNDVSLNCTVKANPAAVYSWH-----------SEHLTEKISSSVIQSSTLSPGNYTCI 274

  Fly   439 ARNSLG 444
            |.|.||
Zfish   275 ATNFLG 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxnNP_523891.2 LRR_RI 51..>161 CDD:238064
leucine-rich repeat 54..77 CDD:275380
LRR_8 55..112 CDD:290566
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..125 CDD:275380
LRR_8 124..184 CDD:290566
leucine-rich repeat 126..149 CDD:275380
LRR_4 148..185 CDD:289563
leucine-rich repeat 150..173 CDD:275380
Ig 240..325 CDD:299845 17/80 (21%)
IG_like 242..325 CDD:214653 17/80 (21%)
I-set 366..450 CDD:254352 21/79 (27%)
Ig 384..451 CDD:143165 18/61 (30%)
I-set 458..546 CDD:254352
Ig 472..536 CDD:299845
I-set 553..644 CDD:254352
Ig 570..643 CDD:299845
An_peroxidase 777..1317 CDD:281139
peroxidasin_like 898..1338 CDD:188658
VWC 1465..1523 CDD:278520
si:ch211-66e2.3NP_001108576.1 Ig 108..208 CDD:299845 18/112 (16%)
Ig_3 215..277 CDD:290638 19/76 (25%)
IG_like 230..288 CDD:214653 18/62 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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