DRSC/TRiP Functional Genomics Resources

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Protein Alignment dos and raph1b

DIOPT Version :10

Sequence 1:NP_523890.2 Gene:dos / 38321 FlyBaseID:FBgn0016794 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001352514.1 Gene:raph1b / 560319 ZFINID:ZDB-GENE-090311-54 Length:1565 Species:Danio rerio


Alignment Length:938 Identity:188/938 - (20%)
Similarity:294/938 - (31%) Gaps:315/938 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EG--WLIKSPPTKRIWRARWRRRYFTLKQGEIPEQFCLEYYTDHNCRKLKGVIDLDQCEQVDCGL 69
            ||  ||      |...:..|::|||.|:...|       |:....  |.|...||      .|.|
Zfish   471 EGVLWL------KEDGKKSWKKRYFLLRASGI-------YFVPKG--KAKASRDL------VCFL 514

  Fly    70 RL--------ENRKQKFQ----YMFDIKTP----KRTY--YLAAETEADMRDWVNCI-------- 108
            :|        ::.:.|::    |...:|.|    |..|  ||..:....:..|||.|        
Zfish   515 QLDHVNVYYGQDYRSKYKAPTDYCLALKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQ 579

  Fly   109 -----------CQVCHLHDTKQSNELPLG--AVGADENRTQHTS-SSGGLSNSTQNTTTTSLHSS 159
                       .:..:...:..|..:..|  :|...|:::.|:| :..|:|:.     |:|.|  
Zfish   580 LYVNYQEAMKRTEAAYDWSSLSSTSIKSGTSSVSIPESQSNHSSQTDSGMSDG-----TSSSH-- 637

  Fly   160 AGTTAPQASVPNAGGSAQLRRPAVIEEQPM-------------PSNAGNNNSDSVYVNTEYSNRE 211
                |...||.::..|...:|...|||...             .|::.::.|...:::.:..:..
Zfish   638 ----ARSQSVVSSIFSEAWKRGTQIEESTKARPESIRSTHSSHSSHSSHHVSQQQHLHAQQPHVH 698

  Fly   212 TML--------CDANFDQQELLSAAQQ-------------QPPPSPATA--------LYLNHSAL 247
            ::|        ..|....|.|..|..|             .|||.|.::        ::..:|.:
Zfish   699 SILQSRGSVTQAPAQAPTQTLAQAPPQVAPAPPPPPPPPPPPPPPPISSIPHHATPTMFAKYSTI 763

  Fly   248 IQAQAAAAAAE------QLQQQ--------QQQAARLAVSANGVVRKLP---------------- 282
            .:.|.|:.|..      |:|||        :.|:..:...||     :|                
Zfish   764 TRLQNASQATSHHKPQPQIQQQVPPVPPPSKPQSNNIPSGAN-----IPPPPPPPPPASMPPPGS 823

  Fly   283 EHLVLTQQTLAEAAAQQHSSVQASPALSTASGPYIPI-SECFSGSPRFLP--GVPLPGADLAIPN 344
            ...||.....|.|...|.|....||.......|.:|: |:.....|..:|  ..|||      |.
Zfish   824 AMAVLKLGPPAAAVIPQISPSPPSPPPPPPPPPIMPVQSQPQPPPPPIMPMQSQPLP------PP 882

  Fly   345 NPTTPL--NNLDPKFYDTPRSHNNIGL----NLTNDQSYS----PKITNLSLQQLANNNASKQRS 399
            .|.||:  :||.|     |....:..|    .:|..||::    |.||.:....|          
Zfish   883 PPITPMQSHNLPP-----PPPMQSHALPPPPPITPMQSHALPPPPPITPMQSHAL---------- 932

  Fly   400 DSDSESVFTDDDEWAHPLPLRENVDRSTRPSDSSIENESFVLTYSQRFSKMPEEGGAIVPPAE-- 462
                          ..|.|:......:..|.......:|..|......  ||.:...:.|||:  
Zfish   933 --------------PPPPPITPMQSHALPPPPPITPMQSHALPPPPPI--MPMQSEPLPPPAQIM 981

  Fly   463 --KSSKLAGAASLPEAGDQGTLDKLAKVLKNKNNLILDFKENEKIPRDLPQLSDTENTSPAIVAR 525
              :|..|.....|.:...|........|         .| :::.:|...|.|.......|..:..
Zfish   982 PMQSHPLPPPPPLVQMQSQPMPPPPPTV---------SF-QSQPLPPPPPPLQANGLPPPPPLIT 1036

  Fly   526 RNAHSAFIEESYDIPRSHQQPYYNVNQLLGERPVTSPHNSN----PIAASTPNLMAADLGAVAAI 586
            .....||   ::..|.:.|.             |..|.|.|    |.....|..:|..|.....:
Zfish  1037 NGLKQAF---AHKFPSTPQD-------------VLPPANQNNFPPPPPPPPPPPLAPTLPPYQHV 1085

  Fly   587 SAAANPGLMGEAQAVASSPTSARTLPRHCYTNAA--PTKMEGNVFRYDFMEQADCPPVNRKLKPK 649
            ::.:||      ......|......|.|.....|  |....|..           ||   :..||
Zfish  1086 TSTSNP------PPPPPPPPPPPPAPIHLANQPAVLPKFFTGGF-----------PP---QKAPK 1130

  Fly   650 VAGGL-------PVVEDKPPEEFPAKPPVGVDQLTNKLGAAQLQQPIGPPSVDRKCKPNAYKLGN 707
            .:.|:       |.::..||...|..||.         .|....||  ||::     |..:.|  
Zfish  1131 PSCGILPVSPVAPALQPPPPPPPPPPPPP---------PAPLKNQP--PPTL-----PKQHSL-- 1177

  Fly   708 SATMSPATRRSSGAPLSMV--LPHETDVHSPAAANAFFHETRTLPRQQHRHHPNSPGSMSVQHQR 770
            |.|: |.:.::|..| |||  |..:..|.|||..|    :|.:|..      |.||.::.|:   
Zfish  1178 SKTL-PFSSQTSSVP-SMVKQLASQFPVASPALTN----QTDSLKA------PQSPPAVKVK--- 1227

  Fly   771 TASAAAAMMSLTAAAAPKQQAAAQTEHK 798
                            ||.|...|.:.:
Zfish  1228 ----------------PKWQPVGQGQQQ 1239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dosNP_523890.2 PH_Gab2_2 2..115 CDD:241535 31/146 (21%)
raph1bNP_001352514.1 RA_MRL_Lpd 338..427 CDD:340553
PH_APBB1IP 463..585 CDD:269961 31/134 (23%)
Blue background indicates that the domain is not in the aligned region.

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