DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp4d20 and Cyp26c1

DIOPT Version :9

Sequence 1:NP_647723.2 Gene:Cyp4d20 / 38311 FlyBaseID:FBgn0035344 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001098671.1 Gene:Cyp26c1 / 546726 MGIID:2679699 Length:518 Species:Mus musculus


Alignment Length:513 Identity:120/513 - (23%)
Similarity:198/513 - (38%) Gaps:98/513 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TLITGALIL-------LLTWDFGRKRQRVLAFEKSAIPGPISIPILGCGLQALHLGAENIIGWV- 60
            ||:...|:|       .|.|...|.....|...|    |.:..|..|   :.||        |: 
Mouse    18 TLLCAGLLLGLAQQLWTLRWTLSRDWASTLPLPK----GSMGWPFFG---ETLH--------WLV 67

  Fly    61 -GEKF-----DKYGKTFRFWILGESLIYTKDLQYFETILSSTTLLEKGQLYEYLRPFL-NDGLLV 118
             |.:|     ::||..|:..:||..:|.....:...|||.....|.:.|..:.....| :..||.
Mouse    68 QGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLG 132

  Fly   119 STGRKWHARRKIFTHAFHFKVLEHYVEIMDRHSSVMVDNLRKVADGKTAVDMLKYVSLAALDVIT 183
            :.|.....|||:....|....||.:|   .|....:...:|.....:..|.:.:........:..
Mouse   133 AVGEPHRQRRKVLARVFSRSSLEQFV---PRLQGALRREVRSWCAAQRPVAVYQAAKALTFRMAA 194

  Fly   184 EAAMGVQVNAQNDPDFPYIKALKSVVYIQPDRMFRFSRRYNWLFPLAAPLLHRQLLSDIRV---M 245
            ...:|:|::.....:..:                .|.:....||.|...:....|...||.   :
Mouse   195 RILLGLQLDEARCTELAH----------------TFEQLVENLFSLPLDVPFSGLRKGIRARDQL 243

  Fly   246 HDFTDKVISERRETVRRAKADGTYRPLSLGDAEIGSKSQMALLDILLQSSINNQPLSDADIREEV 310
            ::..|:.::|:.:..:.|:.         |||        .||.|.....:.::| |..:::|..
Mouse   244 YEHLDEAVAEKLQEKQTAEP---------GDA--------LLLIINSARELGHEP-SVQELKELA 290

  Fly   311 DTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQ------------RVLG--PDASA--PVT 359
            ...:|....||:|..:..:..:.:||....:|.:||.            |..|  ||...  .::
Mouse   291 VELLFAAFFTTASASTSLILLLLQHPAAITKIQQELSAQGLGRACTCTPRASGSPPDCGCEPDLS 355

  Fly   360 QAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKTIPANTSIYLVLYYAHRD-----AN 419
            .|.|..|:|:|||:||.:||.|||....|.|.:..|:....||...|:    .|:.||     |.
Mouse   356 LAMLGRLRYVDCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWSV----MYSIRDTHETAAV 416

  Fly   420 YFPDPLSFRPERF-LE--DQEQGHNTFAYVPFSAGPKNCIGQKFAVLEMKVLISKVLR 474
            |...|..|.|||| :|  |.......|.|:||..|.::|:||:.|...:::|..:::|
Mouse   417 YRSPPEGFDPERFGVESGDARGSGGRFHYIPFGGGARSCLGQELAQAVLQLLAVELVR 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4d20NP_647723.2 p450 34..493 CDD:278495 111/476 (23%)
Cyp26c1NP_001098671.1 p450 40..500 CDD:386267 114/491 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5309
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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