DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp4d20 and cyp26a1

DIOPT Version :9

Sequence 1:NP_647723.2 Gene:Cyp4d20 / 38311 FlyBaseID:FBgn0035344 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_571221.2 Gene:cyp26a1 / 30381 ZFINID:ZDB-GENE-990415-44 Length:492 Species:Danio rerio


Alignment Length:465 Identity:109/465 - (23%)
Similarity:195/465 - (41%) Gaps:52/465 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PGPISIPILGCGLQALHLGAENIIGWVGEKFDKYGKTFRFWILGESLIYTKDLQYFETILSSTTL 98
            ||.:.:|.:|..||.:....:    ::..|..|||..::..:.|...:..........||.....
Zfish    46 PGTMGLPFIGETLQLILQRRK----FLRMKRQKYGCIYKTHLFGNPTVRVMGADNVRQILLGEHK 106

  Fly    99 LEKGQLYEYLRPFLNDGLLVST-GRKWHARRKIFTHAFHFKVLEHYVEIMDRH-SSVMVDNLRKV 161
            |...|....:|..|....|.:. |.:...::|....||....||||:.::.:. .|.:.:.|:|.
Zfish   107 LVSVQWPASVRTILGSDTLSNVHGVQHKNKKKAIMRAFSRDALEHYIPVIQQEVKSAIQEWLQKD 171

  Fly   162 ADGKTAVDMLKYVSLAALDVITEAAMGVQVNAQNDPDFPYIKALKSVVYIQPDRMFRFSRRYNWL 226
            :......:|.|.:...|:.::    :|.:.......:...::|.:.::              ..|
Zfish   172 SCVLVYPEMKKLMFRIAMRIL----LGFEPEQIKTDEQELVEAFEEMI--------------KNL 218

  Fly   227 FPLAAPLLHRQLLSDIRVMHDFTDKVISERRETVRRAKADGTYRPLSLGDAEIGSKSQMALLDIL 291
            |.|...:....|...:|..:....|:    .|.:|:...|        .|.|...|.:.||..::
Zfish   219 FSLPIDVPFSGLYRGLRARNFIHSKI----EENIRKKIQD--------DDNENEQKYKDALQLLI 271

  Fly   292 LQSSINNQPLSDADIREEVDTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQRVLGPDASA 356
            ..|..:::|.|...::|.....:|.|.:||:|..:..:..:..:.||.|::.||:|..:......
Zfish   272 ENSRRSDEPFSLQAMKEAATELLFGGHETTASTATSLVMFLGLNTEVVQKVREEVQEKVEMGMYT 336

  Fly   357 P---VTQAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKTIPANTSIYLVLYYAHRDA 418
            |   ::...|..|||..||||||:|:.||||...|.|.|..|:....||...::...:...|..|
Zfish   337 PGKGLSMELLDQLKYTGCVIKETLRINPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVA 401

  Fly   419 NYFPDPLSFRPERFLEDQEQGHNTFAYVPFSAGPKNCIGQKFAVLEMKVLISKVLRFYELLPLGE 483
            :.||:...|:||||:....:..:.|.|:||..|.:.|:|::||.:.:|:.:             .
Zfish   402 DVFPNKDEFQPERFMSKGLEDGSRFNYIPFGGGSRMCVGKEFAKVLLKIFL-------------V 453

  Fly   484 ELKPMLNFIL 493
            ||....|:||
Zfish   454 ELTQHCNWIL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4d20NP_647723.2 p450 34..493 CDD:278495 107/463 (23%)
cyp26a1NP_571221.2 p450 14..487 CDD:299894 109/465 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.