DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp4d20 and cyp26c1

DIOPT Version :9

Sequence 1:NP_647723.2 Gene:Cyp4d20 / 38311 FlyBaseID:FBgn0035344 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_031761583.1 Gene:cyp26c1 / 100489980 XenbaseID:XB-GENE-1219115 Length:608 Species:Xenopus tropicalis


Alignment Length:605 Identity:124/605 - (20%)
Similarity:204/605 - (33%) Gaps:200/605 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ITGALILL-----------LTWDFGRKRQRVLAFEKSAIPGPISIPILGCGLQALHLGAENIIGW 59
            :|.||.|:           |.|...|.|...|...|    |.:..|..|   :.||        |
 Frog    16 LTSALSLVLLLAASHQLWSLRWHSTRDRGSSLPLPK----GSMGWPFFG---ETLH--------W 65

  Fly    60 V--GEKF-----DKYGKTFRFWILGESLIYTKDLQYFETILSSTTLLEKGQLYEYLRPFLNDGLL 117
            :  |..|     :|||..|:..:||:.:|.....:....||.....|...|..:..:..|....|
 Frog    66 LVQGSSFHSSRREKYGNIFKTHLLGKPVIRVTGAENIRKILLGEHHLVSTQWPQSTQIILGSNTL 130

  Fly   118 V-STGRKWHARRKIFTHAFHFKVLEHYVEIMDRHSSVMVDNLRKVADGKTAVDMLKYVSLAALDV 181
            . |.|.....:||:.:.......||.|:..:  |.:|..: :|....|...|.||.........:
 Frog   131 SNSIGELHRQKRKMMSKVLSSAALESYLPRI--HEAVRWE-VRSWCRGVGPVSMLSCAKALTFRI 192

  Fly   182 ITEAAMGVQVNAQNDPDFPYI-KALKSVVYIQPDRMFRFSRRYNWLFPLAAPLLHRQLLSDIR-- 243
            .....:|:.:   .|..|..: :..:.:|    :.:|        ..||..|      .|.:|  
 Frog   193 AARILLGLSL---TDTQFQELTRTFEQLV----ENLF--------CLPLDIP------FSGLRKG 236

  Fly   244 -----VMHDFTDKVISERRETVRRAKADGTYRPLSLGDAEIGSKSQMALLDILLQSS------IN 297
                 .:|.:.::.|.|     :.:|.|    |.:..||          ||.|:.|:      ||
 Frog   237 MKARDTLHQYMEEAIKE-----KLSKRD----PDACEDA----------LDYLINSAKEGGKEIN 282

  Fly   298 NQPLSDADIREEVDTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQR-------------- 348
            .|.|.::.|.     .:|....||:|..:..:..:.:||....:|.:||..              
 Frog   283 MQELKESAIE-----LIFAAFLTTASASTSLVLLLLKHPSAIHKIRQELASHGLSEHCEQCLPAT 342

  Fly   349 ------------------------VLGPDA----------------------------------- 354
                                    |:|.:.                                   
 Frog   343 ENPNNNILQDNGHQCLTAGCQLPLVMGTEGQVKTLWEQTKQLLTDRTDQDPQNSLSSKNLVNGEN 407

  Fly   355 ---SAP---------------------------VTQAQLQDLKYLDCVIKETMRLYPPVPAIGRH 389
               .||                           ::..:|:.|.|||||:||.:||.|||....|.
 Frog   408 RIQEAPCSHDKSNCSPVPGKLQNSVFEGTCQQNISLEKLKSLHYLDCVVKEVLRLLPPVSGGYRT 472

  Fly   390 AQKELEIGDKTIPANTSIYLVLYYAHRDANYFPDPLSFRPERFLEDQEQGH-NTFAYVPFSAGPK 453
            |.:..|:....||...|:...:...|..|..:.:...|.||||..::::|. ..|.|:||..|.:
 Frog   473 ALQTFELDGYQIPKGWSVMYSIRDTHETAAVYQNAEMFDPERFSTERDEGKLGRFNYIPFGGGAR 537

  Fly   454 NCIGQKFAVLEMKVLISKVL 473
            :|||::.|.:.:|:|..:::
 Frog   538 SCIGKELAQIILKILAMELV 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4d20NP_647723.2 p450 34..493 CDD:278495 114/566 (20%)
cyp26c1XP_031761583.1 cytochrome_P450 59..588 CDD:425388 112/558 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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