DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Svil and Scin

DIOPT Version :9

Sequence 1:NP_001286919.1 Gene:Svil / 38306 FlyBaseID:FBgn0266696 Length:4526 Species:Drosophila melanogaster
Sequence 2:NP_942043.1 Gene:Scin / 298975 RGDID:735034 Length:715 Species:Rattus norvegicus


Alignment Length:723 Identity:168/723 - (23%)
Similarity:303/723 - (41%) Gaps:174/723 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  3736 LLHVKGRTHVQTRLVEPVHTSLNRGDCFILVAGSQLFRYVGSFANVIEISRSKKICAAIVENKDL 3800
            |||||||..|:...|.....|.|:|||||:..|::::::.||..|..|..::.::...|.:|:..
  Rat   139 LLHVKGRRVVRATEVPLSWQSFNKGDCFIIDLGTEIYQWCGSSCNKYERLKASQVATGIRDNERK 203

  Fly  3801 GCTATQEVILTDGKYLKERQWRQFWQLLGKKEDDQSDIAECGHADEDDVFESSLIETNKIYEYQD 3865
            |  .:|.:::.:|....|     ..::||:|.:     ...|..|:|.:.:.|..:..|:|...|
  Rat   204 G--RSQLIVVEEGSEPPE-----LMKVLG
RKPE-----LPDGDNDDDVIADISNRKMAKLYMVSD 256

  Fly  3866 EA------LIPLEKFWGCIPKVDMLDTRKVLVFDFGS--ELYVWNGKNAPSDAKRAAMRLAQEHF 3922
            .:      |:..|..:    .:.||...:..:.|.|:  :::||.||||....::.||:.|:|  
  Rat   257 ASGSMKVTLVAEENPF----SMGMLLPEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEE-- 315

  Fly  3923 GAENSADYADCYLNPLNYVAIVGRRENTKYAKRCAQRPEWCVLGKITQNMETVLFKEKFSDWPEI 3987
                       :|:.:||.|      ||:             :..:.:..||.:||:.|.||.:.
  Rat   316 -----------FLHKMNYSA------NTQ-------------IQVLPEGGETPIFKQFFKDWKDK 350

  Fly  3988 ERED-LEKDYLSNGVHMVRAL--NGTALHKGEPYQEPNLVLEQANLGRGNFYYDTDTMRHFDVIT 4049
            ::.| ..|.|::..|..::.:  :.:.||     ..|.:..:...:..|               :
  Rat   351 DQSDGFGKVYITEKVAQIKQIPFDASKLH-----SSPQMAAQHNMVDDG---------------S 395

  Fly  4050 KSTDKWQIH---EFNFDAANNRDDYGHFYSAESYIVRWIYQISVTVRELSGKVSNRSTVGRDRCV 4111
            ...:.|::.   ....|.::    ||.||..:.||:.:.|.                   |.:.:
  Rat   396 GGVEIWRVENSGRVQIDPSS----YGEFYGGDCYIILYTYP-------------------RGQII 437

  Fly  4112 YFTWQGQDSSANEKGAAALLTVELDKEKG---AQMRVSQGDECTAFVRLFRQ----MWQHRGRKE 4169
            | ||||.|::.:|...:|.|||:||:..|   .|:|||||.|....:.||:.    ::::...|:
  Rat   438 Y-TWQGADATRDELTMSAFLTVQLDRSLGGQAVQVRVSQGKEPAHLLSLFKDKPLIIYKNGTSKK 501

  Fly  4170 QCLERHSEWRLYQLQGNVSEETIIKEVVCQSSHLRSRSSMLLIHGSQGNVIVWHGSKSAPHTRNV 4234
            .........||:|::.|::..|.|.||...::.|.|..:.:| ...:.|..:|.|..::......
  Rat   502 GGQAPAPPTRLFQVRRNLASITRIVEVDVDTNSLNSNDTFVL-KLPRNNGFIWIGKGASQEEEKG 565

  Fly  4235 AVGVAQDLIKTVPKDLFSAETANLTEVEEGSDDDQCKKALGLKDERNEY-GSLLKSTKSFDYQIR 4298
            |..|| |::|           ...|.::||.:.|:...:||   .|.:| .|.|..|::.|:..|
  Rat   566 AEYVA-DVLK-----------CKTTRIQEGKEPDEFWNSLG---GRGDYQTSPLLETQAEDHPPR 615

  Fly  4299 IFNFSSTQGVFKALELSDPLRCQDLHSPYPFSQSQLYNARQPTIFLLDDGDELWLWMGWWPLEDV 4363
            ::..|:..|.|...|:           |..|:|..|   .:..:.|||..:::::|:|       
  Rat   616 LYGCSNKTGRFIIEEV-----------PGEFTQDDL---AEDDVMLLDAWEQIFIWIG------- 659

  Fly  4364 KINTDERSSPTNENRAGVNRWISERRAALETAVDYWRA-KHGENENEPFHGIKGQVVWAGLEPLA 4427
                    ...||         .|::.::::|..|... ..|.::..|...||     .|.||..
  Rat   660 --------KDANE---------VEKKESVKSAKMYLETDPSGRDKRTPIVIIK-----QGHEPPT 702

  Fly  4428 FKALFPDW 4435
            |...|..|
  Rat   703 FTGWFLGW 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SvilNP_001286919.1 gelsolin_S2_like 3733..3825 CDD:200445 27/88 (31%)
gelsolin_like 3859..3965 CDD:200436 25/113 (22%)
ADF_gelsolin <4069..4158 CDD:301701 29/91 (32%)
gelsolin_S5_like 4176..4279 CDD:200444 25/102 (25%)
ADF_gelsolin 4328..4435 CDD:301701 22/107 (21%)
VHP 4492..4526 CDD:280388
ScinNP_942043.1 gelsolin_S1_like 10..121 CDD:200446
gelsolin_S2_like 136..225 CDD:200445 27/92 (29%)
gelsolin_S3_like 246..346 CDD:200448 30/135 (22%)
gelsolin_S4_like 390..486 CDD:200449 32/134 (24%)
gelsolin_S5_like 508..598 CDD:200444 26/105 (25%)
gelsolin_S6_like 613..711 CDD:200447 29/141 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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