DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Svil and LOC100496020

DIOPT Version :9

Sequence 1:NP_001286919.1 Gene:Svil / 38306 FlyBaseID:FBgn0266696 Length:4526 Species:Drosophila melanogaster
Sequence 2:XP_017950415.2 Gene:LOC100496020 / 100496020 -ID:- Length:715 Species:Xenopus tropicalis


Alignment Length:796 Identity:175/796 - (21%)
Similarity:304/796 - (38%) Gaps:214/796 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  3677 SGIAERELR-RLKLESYGHNANLAAEAIAGLASVEDFKSVALRSSSIPLQQMWLPHKPVMLLHVK 3740
            |.:..|||: ....|..||..:.......|:||  .|:.|.....|..           .|||:|
 Frog    90 SPVQYRELQGHESTEFLGHFKDGIKYQAGGIAS--GFQHVITNDLSAR-----------RLLHIK 141

  Fly  3741 GRTHVQTRLVEPVHTSLNRGDCFILVAGSQLFRYVGSFANVIEISRSKKICAAIVENKDLGCTAT 3805
            ||..|:...|....:|.|.|||||:..|.:::::.||.:|..|..::.::..:|..|        
 Frog   142 GRRVVRATEVPLSWSSFNSGDCFIIDVGPEIYQWCGSKSNKYERLKAAQVATSIRNN-------- 198

  Fly  3806 QEVILTDGKYLKERQWR-------QF------WQLLG-----KKEDDQSDIAECGHADEDDVFES 3852
                        |||.|       ||      .|:||     .:.||.:|:..       ||...
 Frog   199 ------------ERQGRSNLTVVEQFSEPPSLMQILGPMPVLPEGDDDTDVTA-------DVTNR 244

  Fly  3853 SLIETNKIYEYQDEA------LIPLEKFWGCIPKVDMLDTRKVLVFDFG-SELYVWNGKNAPSDA 3910
            .:.   |:|...|.:      |:..|..:    .:.||.:.:..:.|.. .:::||.||.|..:.
 Frog   245 KMA---KLYMVSDASGTMQTTLVSEENPF----SMPMLLSDECFILDSSDKKIFVWKGKGANVNE 302

  Fly  3911 KRAAMRLAQEHFGAENSADYADCYLNPLNYVAIVGRRENTKYAKRCAQRPEWCVLGKITQNMETV 3975
            |:.|::.|::             ::..:||                   |....:..:.:..||.
 Frog   303 KKHAIKTAED-------------FIKKMNY-------------------PATTQIIVLPEGGETP 335

  Fly  3976 LFKEKFSDWPEIER-EDLEKDYLSNGVHMVRAL--NGTALHKGEPYQEPNLVLEQANLGRGNFYY 4037
            :||:.|.||.:.|: |.|.|.:....:..:..:  :.|.||........:.:|:.   |.|    
 Frog   336 IFKQYFKDWKDKEQSEGLGKVFTKEQIAQIEQIPFDATKLHTSARMAAQHNMLDD---GSG---- 393

  Fly  4038 DTDTMRHFDVITKSTDKWQIHEFNFDAANNRDDYGHFYSAESYIVRWIYQISVTVRELSGKVSNR 4102
                  |.::       |:| |.|.....:.:.||.||..:.||:.:                  
 Frog   394 ------HVEI-------WRI-EKNARVPLDPETYGQFYGGDCYIIMY------------------ 426

  Fly  4103 STVGRDRCVYFTWQGQDSSANEKGAAALLTVELDK--EKGA-QMRVSQGDECTAFVRLFRQ---- 4160
            :|:...:.:| ||||.::..:|...:|.|||:||:  :.|| |.||.||.|....:.:|:.    
 Frog   427 TTLNGQKIIY-TWQGANAGKDELTYSAFLTVQLDRSLKAGATQTRVPQGKEPAHLLSVFKDKPLI 490

  Fly  4161 MWQHRGRKEQCLERHSEWRLYQLQGNVSEETIIKEVVCQSSHLRSRSSMLLIHGSQGNVIVWHGS 4225
            :::....::.........||:|::.|:...|.|.||...::.|.:..:.:| .....:.::|.|.
 Frog   491 IYKDGTSRKGVQAPPRPIRLFQVRKNLGSITRIAEVDADATSLNANDAFVL-KMRDNSAVMWIGK 554

  Fly  4226 KSAPHTRNVAVGVAQDLIKTVPKDLFSAETANLTEVEEGSDDDQCKKALGLKDERNEYGSLLKST 4290
                       |..:|.|:.. |.|..........:.||.:.|.....||.|  :....|.|..|
 Frog   555 -----------GANEDEIEGA-KYLVKVLNLRAINIAEGEEPDIFWTTLGGK--KTYQTSPLLET 605

  Fly  4291 KSFDYQIRIFNFSSTQGVFKALELSDPLRCQDLHSPYPFSQSQLYNARQPTIFLLDDGDELWLWM 4355
            :..|:..|:|..|:..|.|...|:           |..|:|..:   .:..:.:||..::::||:
 Frog   606 RLEDHPPRLFGCSNKTGRFVVEEV-----------PGEFTQEDM---AEDDVMMLDTWEQIFLWI 656

  Fly  4356 GWWPLEDVKINTDERSSPTNENRAGVNRWISERRAALETAVDYWRA-KHGENENEPFHGIKGQVV 4419
            |               ...||         .|::.:|.:|..|.:. ..|.:::.|...:|    
 Frog   657 G---------------KDANE---------VEKKESLVSAKKYLQTDPSGRDKDIPITTVK---- 693

  Fly  4420 WAGLEPLAFKALFPDW 4435
             .|.|||:|...|..|
 Frog   694 -QGNEPLSFTGWFLAW 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SvilNP_001286919.1 gelsolin_S2_like 3733..3825 CDD:200445 28/104 (27%)
gelsolin_like 3859..3965 CDD:200436 19/112 (17%)
ADF_gelsolin <4069..4158 CDD:301701 27/91 (30%)
gelsolin_S5_like 4176..4279 CDD:200444 23/102 (23%)
ADF_gelsolin 4328..4435 CDD:301701 22/107 (21%)
VHP 4492..4526 CDD:280388
LOC100496020XP_017950415.2 gelsolin_S1_like 8..119 CDD:200446 7/28 (25%)
gelsolin_S2_like 136..223 CDD:200445 29/106 (27%)
gelsolin_S3_like 244..343 CDD:200448 24/137 (18%)
gelsolin_S4_like 387..484 CDD:200449 35/136 (26%)
gelsolin_S5_like 507..595 CDD:200444 23/102 (23%)
gelsolin_S6_like 611..709 CDD:200447 30/141 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.