DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and AT3G06330

DIOPT Version :10

Sequence 1:NP_647715.2 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:NP_566281.1 Gene:AT3G06330 / 819807 AraportID:AT3G06330 Length:426 Species:Arabidopsis thaliana


Alignment Length:179 Identity:35/179 - (19%)
Similarity:57/179 - (31%) Gaps:69/179 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPIYAPDMP-- 71
            :||:|....:....|...|.|.|.::.:|:.|.|.|........|::|.......|:....:|  
plant   217 VCRICLDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVTLVRVPTP 281

  Fly    72 ----------------------------------------RVLPIKD-------------VLVGL 83
                                                    ..|.|:|             :.:||
plant   282 NQQNNRRGSSQQNMPSQTVSAWQEFVVLVLISTVCYFFFLEQLLIRDLNKQAIYIAAPFSLTLGL 346

  Fly    84 MS---AVLEGAR--CW----LHYTLVGL---AWFGVVPLSAYRTYRYLF 120
            ::   |::...|  .|    |.:.|||:   .::..|.|||  ||..||
plant   347 LASIFAIVLAIREYIWTYAALEFALVGMLVHIFYATVRLSA--TYSILF 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_647715.2 SSM4 9..>206 CDD:227510 35/179 (20%)
RING_CH-C4HC3_MARCH6 9..58 CDD:438362 13/48 (27%)
SSM4 <359..>554 CDD:227510
AT3G06330NP_566281.1 RINGv 217..265 CDD:128983 12/47 (26%)
7TM-7TMR_HD 306..>418 CDD:429603 20/90 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.