DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and marchf1

DIOPT Version :10

Sequence 1:NP_647715.2 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:XP_021331952.1 Gene:marchf1 / 797069 ZFINID:ZDB-GENE-081112-1 Length:503 Species:Danio rerio


Alignment Length:250 Identity:59/250 - (23%)
Similarity:97/250 - (38%) Gaps:64/250 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPIY 66
            |:|   ::||:|.||...:.||..||.||||::::||.||..|::.|....||||.|.|      
Zfish   283 DEL---EVCRICHCEGDEECPLITPCHCTGSLRFVHQGCLHQWIKSSDTRCCELCKYDF------ 338

  Fly    67 APDMPRVLPIKDVLVGLMSAVLEGARCW--LHYT-----------------LVGLAW--FGVVPL 110
                            :|...|:..|.|  ||.:                 :|.:.|  :.::..
Zfish   339 ----------------IMETHLKPLRKWEKLHMSTSERRKIFCSVIFHLAAVVCVIWSLYVLIDR 387

  Fly   111 SA----YRTYRYLFRASSFDMILTLPFDIFSVENLASDAFRGCFV---VTCTLLSFIGLVWLREQ 168
            :|    :...:.|.|.|..:.:..|.:..::...:.:..|.|..:   :.|.:  ::.| |.|.:
Zfish   388 TAEEIRHSKNKALVRLSPLNAVGVLDWPFWTKLIVVAVGFTGGLIFMYIQCKV--YLQL-WRRLK 449

  Fly   169 -----ILHGGGPDWLER-DDAPLQAAAANPAPDPAAEAAPQPQDDNNNADDNEAP 217
                 |.....||.... ::.|.|...:|..  ..|...|.||...|......||
Zfish   450 AFNRIIFVQNCPDTARNGENRPSQVTQSNGT--HGAVEVPAPQTQTNAGGVEMAP 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_647715.2 SSM4 9..>206 CDD:227510 53/230 (23%)
RING_CH-C4HC3_MARCH6 9..58 CDD:438362 23/48 (48%)
SSM4 <359..>554 CDD:227510
marchf1XP_021331952.1 RING_Ubox 279..351 CDD:473075 30/92 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.