DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and gpr139

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001352082.1 Gene:gpr139 / 798482 ZFINID:ZDB-GENE-050823-2 Length:363 Species:Danio rerio


Alignment Length:412 Identity:101/412 - (24%)
Similarity:161/412 - (39%) Gaps:143/412 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 YVSLVVCILGTIANTLNIIVLTR---REMRSPTNAILTGLAVADLAVML--EYIPYTIHDYILTD 89
            |.|.::| ||..||.|.:|:|::   |..:|..|.:| .|||||:.|:|  .::.:.:.|:||..
Zfish    31 YYSSLLC-LGLPANILTVIILSQLVLRRQKSSYNYLL-ALAVADILVLLLIVFVDFLLEDFILGA 93

  Fly    90 SLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITIT 154
            .||.....:..   .::|.||     || |||:||.|.:.|||||.:|.:..            |
Zfish    94 PLPHSLNKAVQ---VLEFSSI-----HT-SIWITVPLTIDRYIAVCHPLRYH------------T 137

  Fly   155 TAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSART-AALNATPTS 218
            .:|......|..::|.              |.:|:|:|...:     .||..... |:.....:|
Zfish   138 VSYPARTRKVILAVYA--------------GCLISSVPYYWW-----PELWHGLPGASPGGRSSS 183

  Fly   219 APLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVVIKLI 283
            |..:..||::.:                     |||                           |:
Zfish   184 AGQHVLVWVHCA---------------------TVY---------------------------LL 200

  Fly   284 PCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTD 348
            ||.....|:. :|:..|..:|...:|.      |.|.|                           
Zfish   201 PCSVFFSLNA-IIVRKLRCRRSCFRLR------GYSTG--------------------------- 231

  Fly   349 RTTRMLLAVLLLFLITEFPQGIMGLLN------AVLGDVFYLQCYLRLSDLMDILALINSSINFI 407
            :||.:|||:..:|.:...|:.:|.|.:      |:.|....|..   ::|:.::|||:|:.:||.
Zfish   232 KTTAILLAITSVFAVLWAPRTLMILYHLYTVQPAMPGPARLLHL---VTDVANMLALLNTGVNFF 293

  Fly   408 LYCSMSKQFR----TTFTLLFR 425
            |||.:||:||    |.....||
Zfish   294 LYCFISKRFRRMAGTVLKAFFR 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 101/412 (25%)
gpr139NP_001352082.1 7tmA_GPR139 28..306 CDD:320585 98/401 (24%)
TM helix 1 28..53 CDD:320585 10/22 (45%)
TM helix 2 61..86 CDD:320585 9/25 (36%)
TM helix 3 100..130 CDD:320585 15/38 (39%)
TM helix 4 142..162 CDD:320585 5/33 (15%)
TM helix 5 186..211 CDD:320585 9/73 (12%)
TM helix 6 228..260 CDD:320585 11/58 (19%)
TM helix 7 274..299 CDD:320585 10/27 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 107 1.000 Inparanoid score I4898
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8429
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.970

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