DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and CNMaR

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001027122.2 Gene:CNMaR / 39127 FlyBaseID:FBgn0053696 Length:480 Species:Drosophila melanogaster


Alignment Length:518 Identity:109/518 - (21%)
Similarity:183/518 - (35%) Gaps:163/518 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 MHGYVSLVVCILGTIANTLNIIVLTRREMRSPTNAI-LTGLAVAD-------LAVMLEYIPYTIH 83
            :|.|...|:|..|:|.|.|::.|..|.::|..:::. |..|||:|       .|..|.::...| 
  Fly    61 VHQYYIPVLCCTGSIGNILSVFVFFRTKLRKLSSSFYLAALAVSDTCFLAGLFAQWLNFLNVDI- 124

  Fly    84 DYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRT 148
                           |:...|.:|.:.|:.:....|:|..|...|.|:|||.||.|.:..|.:|.
  Fly   125 ---------------YNQNYFCQFFTFFSYLASFCSVWFVVAFTVERFIAVIYPLKRQTMCTVRR 174

  Fly   149 TIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSAR---TA 210
            ..|.:....:|..|...|  |::.|...::.:|:.....:||        :|:.:|....   |.
  Fly   175 AKIVLFCLTLVGCLHCLP--YIVIAKPVFMPKLNTTICDLNS--------EYKEQLALFNYWDTI 229

  Fly   211 ALNATP--TSAPLNE----TVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQ 269
            .:.|.|  |.|.||.    |||..|:...|.|.....|..:.:..|        |..:...||  
  Fly   230 VVYAVPFTTIAVLNTCTGCTVWKFATVRRTLTMHKMKPQTNSMPSN--------SSNSSGGAS-- 284

  Fly   270 NATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRP 334
                              ..:.|.||..:|    :|:|...:.|      :|..:.||.:..|:.
  Fly   285 ------------------SAVASYRLSASL----KRQKSTGTHP------SGQHNVANRQTDDQE 321

  Fly   335 RK-----------------NSKTLEKEKQTD---RTTRMLLAVLLLFLITEFPQGIMGLLNAVLG 379
            ::                 ..|...::.|..   :.|:|||.|..:|:....|..::        
  Fly   322 QQQQSQQHQINNCQHHCEITQKPARRKVQNSSQLKVTKMLLIVSTVFVCLNLPSCLL-------- 378

  Fly   380 DVFYLQCY------------LRLSDLMDILALINSSINFILYCSMSKQFRTTFTLLFRPKFLDKW 432
               .::.|            :.|..:.....:.|..|||:|||...:.||.....:||       
  Fly   379 ---RIEAYWETESARNQNSTIALQYIFHAFFITNFGINFVLYCVSGQNFRKAVLSIFR------- 433

  Fly   433 LPVAQDEMAAARAERSAVAPVLEKGRQQPQVVMASTTTNITQVTNLXHRRSRG---RRTLLSR 492
                    ..:.|:|.|                     ..||||.. :.|:.|   ||.::::
  Fly   434 --------RVSSAQREA---------------------GNTQVTVSEYCRNTGTSTRRRMMTQ 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 97/445 (22%)
CNMaRNP_001027122.2 7tm_4 73..>262 CDD:304433 55/214 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467306
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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