DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-83

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001346695.1 Gene:srw-83 / 266935 WormBaseID:WBGene00005830 Length:382 Species:Caenorhabditis elegans


Alignment Length:521 Identity:100/521 - (19%)
Similarity:180/521 - (34%) Gaps:199/521 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TEPL---YCGSGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSP-TNAILTGLAV 68
            |:|:   ||..|  ||.|    :...|..||.||..:.|..::.:|||:.||:. ||:::.|:::
 Worm     5 TDPVFKTYCEWG--NFAT----LTQLVEFVVAILAFLMNIPHLFILTRKSMRTHITNSLMIGISI 63

  Fly    69 ADLAVMLEYIPYTIHDYILTDSLPREEKLSYSWA----CFIKFHS-----------IFAQVLHTI 118
            ||:..:...|               ..::..:|.    || .||:           |..:.:..:
 Worm    64 ADMITLFMII---------------NNRIYVTWLSPYDCF-NFHNYPMIVARYVLEISMESMMRV 112

  Fly   119 SIWLTVTLAVWRYI-------AVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAITE 176
            |.:|.:.||:.|.|       |.|:             :.|....|.:       :|:||     
 Worm   113 SYYLGLCLALIRCIIMKMSRNAPGF-------------LSTTRNGYFL-------TLFLI----- 152

  Fly   177 YVDQLDMNGKVINSIPMTQYVIDYRNELLSAR---TAALNATPTSAPLNETVWLNASTLLTSTTT 238
                      :|:::....|...|:  ::..:   |...|.|...|..:|               
 Worm   153 ----------IISTLISCSYFYGYK--IIKEKEPFTPGANCTGFPAKYSE--------------- 190

  Fly   239 AAPPTPSPVVRN-----VTVYRLYHSDLALHNASLQNATFLI-YSV--------VIKLIPCIALT 289
               |..:.|.:.     ..||.::   .|..:||.|...||. |||        .:|::......
 Worm   191 ---PNYNRVKKKNQLIPTDVYEVF---TASSDASFQCGAFLFTYSVGKFYRTPPNLKILIAALYP 249

  Fly   290 ILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDR--TTR 352
            |..:.|:..:|:|                         .|.|      |..|.::...:|  |:|
 Worm   250 IFGLLLMFEVLKA-------------------------AKVA------STMLSRKDAVERYHTSR 283

  Fly   353 MLLAVLLLFLITEFPQGIMGLLNAVLGDVFY--LQCYLRL-----SDLMDILALINSSINFILYC 410
            |:|.:.:.:::.....|....:..::..:.|  ...|..|     |:|...|...|:..:|::..
 Worm   284 MILVMTIFYMLASCLTGTYKFVRLIVETISYTHFDMYFNLILAYCSNLFSALFCANALAHFLINL 348

  Fly   411 SMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAERSAVAPVLEKG---RQQPQVVMASTTTNI 472
            |||:.:|..                                 |:|.|   |::.:|.|.:.:.|.
 Worm   349 SMSRNYRNA---------------------------------VMELGCCPRRKAEVTMDTKSVNS 380

  Fly   473 T 473
            |
 Worm   381 T 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 84/440 (19%)
TM helix 1 28..53 CDD:410630 8/24 (33%)
TM helix 2 59..84 CDD:410630 6/24 (25%)
TM helix 3 105..135 CDD:410630 10/47 (21%)
TM helix 4 147..167 CDD:410630 2/19 (11%)
TM helix 5 269..294 CDD:410630 8/33 (24%)
TM helix 6 345..375 CDD:410630 6/31 (19%)
TM helix 7 388..413 CDD:410630 7/29 (24%)
srw-83NP_001346695.1 TM helix 1 24..46 CDD:410628 7/21 (33%)
7TM_GPCR_Srw 25..364 CDD:402097 87/476 (18%)
TM helix 2 55..79 CDD:410628 5/38 (13%)
TM helix 3 100..122 CDD:410628 4/21 (19%)
TM helix 4 146..162 CDD:410628 4/37 (11%)
TM helix 5 203..253 CDD:410628 13/52 (25%)
TM helix 6 282..308 CDD:410628 4/25 (16%)
TM helix 7 323..351 CDD:410628 7/27 (26%)

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