DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-145

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001024075.1 Gene:srw-145 / 259658 WormBaseID:WBGene00011197 Length:364 Species:Caenorhabditis elegans


Alignment Length:463 Identity:93/463 - (20%)
Similarity:162/463 - (34%) Gaps:156/463 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSPT-NAILTGLAVADLAVMLEYIPYTI 82
            ::..|:.:.|.|   .||....|.|.:::::|||:.||:.: ..:|.|:.:|:|.:|  ::|   
 Worm     5 SYFFSFLSDHEY---TVCFFSFIINIVHLLILTRKYMRTASIYVLLIGVCIAELYLM--FLP--- 61

  Fly    83 HDYILTDSLPREEKLSYSWACFIKFHSIFAQV------------LHTISIWLTVTLAVWRYIAVG 135
                |...|  ||.|.....|.:. .||| |:            :..:||||.|..|:.|.|.:.
 Worm    62 ----LKQKL--EEFLESRMKCPLP-SSIF-QIYISRIVFSTGDNMSRLSIWLCVLFALVRVIVLQ 118

  Fly   136 YPQKNRV---------WCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSI 191
            ....||.         |       |.|..::::.. ::|.|.|       |.|.::..|..|   
 Worm   119 KINDNRFQILSAPGFGW-------ILIFFSFILSG-IMSISHY-------YKDHIEEVGLCI--- 165

  Fly   192 PMTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRL 256
                                                                |.|...:::|.::
 Worm   166 ----------------------------------------------------PQPGCESLSVSQI 178

  Fly   257 YHSDLALH------NASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPAT 315
            |...|.:.      |.......||...:...::||..:.|:.|.||..::::|::..:.|..|  
 Worm   179 YQYHLVISELYTFGNGIFAKLFFLSNGIFTLILPCSVILIIIVFLIKEIIKSKKKHIERTVNP-- 241

  Fly   316 PGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLG- 379
                                   ..:..||.|...| :|..|...||::   .|::.::..|.| 
 Worm   242 -----------------------HHMRNEKTTILVT-ILSIVEFSFLLS---SGLIFIVEIVFGR 279

  Fly   380 DVFYLQCYLRLSDLMDILALINSSINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAAR 444
            :...:..|..:| |..|.|| .||....|....|.::|.....:|..|          |.:|...
 Worm   280 NTLEIINYANIS-LRWIFAL-KSSTRCFLCVLFSCRYRNAIRRMFGFK----------DAIAVMN 332

  Fly   445 AERSAVAP 452
            ..:.::||
 Worm   333 QHKPSMAP 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 86/420 (20%)
TM helix 1 28..53 CDD:410630 8/24 (33%)
TM helix 2 59..84 CDD:410630 6/25 (24%)
TM helix 3 105..135 CDD:410630 12/41 (29%)
TM helix 4 147..167 CDD:410630 3/19 (16%)
TM helix 5 269..294 CDD:410630 5/24 (21%)
TM helix 6 345..375 CDD:410630 8/29 (28%)
TM helix 7 388..413 CDD:410630 8/24 (33%)
srw-145NP_001024075.1 7TM_GPCR_Srw 13..325 CDD:402097 87/428 (20%)
TM helix 2 44..66 CDD:410628 7/30 (23%)
TM helix 3 89..111 CDD:410628 5/21 (24%)
TM helix 4 136..152 CDD:410628 3/16 (19%)
TM helix 5 198..219 CDD:410628 4/20 (20%)
TM helix 6 250..272 CDD:410628 7/25 (28%)
TM helix 7 287..311 CDD:410628 9/25 (36%)

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