DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsR1 and srw-82

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001346696.1 Gene:srw-82 / 191269 WormBaseID:WBGene00005829 Length:353 Species:Caenorhabditis elegans


Alignment Length:494 Identity:96/494 - (19%)
Similarity:161/494 - (32%) Gaps:187/494 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 YCGSGMDNF--HTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRS-PTNAILTGLAVADLAV 73
            :|  .:.||  ||.      .|..||.||..:.|..::.:|||..||: .||:::.|:::|||..
 Worm    12 FC--DLANFVKHTE------KVEFVVAILALLMNIPHLFILTRTSMRTHSTNSLMIGISIADLIS 68

  Fly    74 MLEYIPYTIHDYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIA-VGYP 137
            :...|......|.|:.:           .||..:               |..|.|.|::. |.:.
 Worm    69 LFMMINNRAQLYWLSPN-----------TCFNSY---------------TYPLNVARFVQDVSWE 107

  Fly   138 QKNRVWCGMRTTIITITTAYVVCVLVV----SPSL-------YLITAITEYVDQLDMNGKVINSI 191
            ...||     :..:.:..|.:.|:::.    :|.:       |.:|....:|:.|         |
 Worm   108 SMMRV-----SFYLGLCLALIRCIIMKMSGNAPDILSTTRNGYFLTLFFIFVNTL---------I 158

  Fly   192 PMTQY----VIDYRNELLSARTAALNATPTSAPLNETVWLNA---STLLTSTTTAAPPTPSPVVR 249
            ....|    ||.|:...    |..:|.|...|...|..:..|   :.|.||..            
 Worm   159 SCFYYYGFRVIKYKEPW----TPGVNCTGFPAKYREPYFYRAPKKNQLFTSER------------ 207

  Fly   250 NVTVYRLYH--SDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSK 312
                |.::.  ||:                ::..|.|...|        |.:||..:..|...: 
 Worm   208 ----YEIFTGCSDI----------------LIAALYPIFGL--------LLMLEVLKSAKVAAT- 243

  Fly   313 PATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDR--TTRMLLAVLLLFLITEFPQGIMGLLN 375
                                       .|.|:...:|  |:||:|.:.:.::...||.|...:  
 Worm   244 ---------------------------MLSKKDAVERYHTSRMILVMTIFYIFASFPTGAYKI-- 279

  Fly   376 AVLGDVFYLQCYLRLSDLMDILALINSSINFILYCSMSKQ--FRTTFTL---LFRPKFLDKWLPV 435
                                        :||..|.|..|.  |...||.   :|...|....|..
 Worm   280 ----------------------------VNFFFYESWRKDGYFYVVFTYTGKIFTSLFCGNALSH 316

  Fly   436 AQDEMAAARAERSAVAPVLEKG---RQQPQVVMASTTTN 471
            ....::.:|..|:|   |:|.|   :::.:|.|.|.:.|
 Worm   317 CLINLSMSRNYRNA---VMELGCCPKRKAEVTMDSKSVN 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 76/417 (18%)
TM helix 1 28..53 CDD:410630 8/24 (33%)
TM helix 2 59..84 CDD:410630 7/24 (29%)
TM helix 3 105..135 CDD:410630 4/30 (13%)
TM helix 4 147..167 CDD:410630 2/23 (9%)
TM helix 5 269..294 CDD:410630 3/24 (13%)
TM helix 6 345..375 CDD:410630 8/31 (26%)
TM helix 7 388..413 CDD:410630 4/24 (17%)
srw-82NP_001346696.1 7TM_GPCR_Srw 24..337 CDD:402097 87/457 (19%)
TM helix 1 25..46 CDD:410628 7/20 (35%)
TM helix 2 55..82 CDD:410628 7/26 (27%)
TM helix 3 100..122 CDD:410628 3/26 (12%)
TM helix 4 145..159 CDD:410628 4/22 (18%)
TM helix 5 195..228 CDD:410628 9/64 (14%)
TM helix 6 257..279 CDD:410628 6/21 (29%)
TM helix 7 296..324 CDD:410628 5/27 (19%)

Return to query results.
Submit another query.