DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and dmsr-10

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_504724.1 Gene:dmsr-10 / 191157 WormBaseID:WBGene00022604 Length:299 Species:Caenorhabditis elegans


Alignment Length:378 Identity:85/378 - (22%)
Similarity:148/378 - (39%) Gaps:126/378 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SYKNMHGYVSLVVCILGTIANTLNIIVLTRREMR-SPTNAILTGLAVADLAVMLEYIPYTIHDYI 86
            ||:..|.::...|.|....||.|.:|||:|:||| |..|..:..:::.||...:..:   |..|:
 Worm    37 SYRPFHYFILACVVIFAFFANILILIVLSRKEMRYSGVNVTMMLISICDLVCAIAGL---IQLYL 98

  Fly    87 LTDSLPREEKLSYSWACFIKFHS-----IFAQVLHTISIWLTVTLAVWRYIAVGYPQKNR-VWCG 145
                    ...|.::..:||.::     .|....|..|::|.:.:|..|.:|:.....:| .|  
 Worm    99 --------RNFSVTYTSYIKAYTQLTVDYFQISFHAASLYLALGMAFCRVVAMSSRTDSRYTW-- 153

  Fly   146 MRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTA 210
             ::...::..|.::|:.|                                ::....|.||: ...
 Worm   154 -QSPKYSLRIALLLCIPV--------------------------------FIFGSHNVLLN-HVE 184

  Fly   211 ALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLI 275
            ..|.|                               :|.|::...|.:|.|.|..|...|..|  
 Worm   185 IENGT-------------------------------IVLNISPLSLANSCLFLKLAIFLNGLF-- 216

  Fly   276 YSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKT 340
                .|::|||.:.:||. :|||.:::.::            ||| |.|   |...|        
 Worm   217 ----FKIVPCILMMVLSF-VILARMKSGKK------------ASN-TNS---GNHID-------- 252

  Fly   341 LEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAV-LGDVFYLQC---YLR 389
                .|..|::|.:.||:::|:|||.|||::.||..: :.|  |::|   :||
 Worm   253 ----AQIVRSSRFIQAVIVVFVITEAPQGVLSLLGGLSIND--YIKCCDTFLR 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 83/373 (22%)
TM helix 1 28..53 CDD:410630 9/24 (38%)
TM helix 2 59..84 CDD:410630 4/24 (17%)
TM helix 3 105..135 CDD:410630 9/34 (26%)
TM helix 4 147..167 CDD:410630 3/19 (16%)
TM helix 5 269..294 CDD:410630 8/24 (33%)
TM helix 6 345..375 CDD:410630 13/29 (45%)
TM helix 7 388..413 CDD:410630 2/2 (100%)
dmsr-10NP_504724.1 7tmA_FMRFamide_R-like 40..289 CDD:410630 78/361 (22%)
TM helix 1 41..67 CDD:410630 9/25 (36%)
TM helix 2 74..96 CDD:410630 4/24 (17%)
TM helix 3 114..144 CDD:410630 7/29 (24%)
TM helix 4 157..177 CDD:410630 3/51 (6%)
TM helix 5 206..231 CDD:410630 10/31 (32%)
TM helix 6 254..283 CDD:410630 13/28 (46%)

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