DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-66

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_493936.2 Gene:srw-66 / 190359 WormBaseID:WBGene00005813 Length:386 Species:Caenorhabditis elegans


Alignment Length:423 Identity:90/423 - (21%)
Similarity:162/423 - (38%) Gaps:127/423 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KNMHGYVSLVVCILGTIANTLNIIVLTRREM-RSPTNAILTGLAVADLAVMLEYIPYTIHDYILT 88
            ||.:.:::.|...:    |.:::.:|||:.| .:..|.|:.|:.:.||..|    .|.|:|.|..
 Worm    36 KNAYNWLACVAVFI----NCIHLSILTRKSMGLNSINIIMIGICICDLVNM----SYAIYDIIFL 92

  Fly    89 DSLPREE---KLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTI 150
            ...|.::   .|||:......:...|..:...::.:..|.:.:.|:..:.:        .:....
 Worm    93 IVHPNDKCTPPLSYAMELLDYWLLSFQDITRRMTSFFGVLMTIVRFFIIKF--------ALNRKF 149

  Fly   151 ITITTA-YVVCVLVVSPSLYLITAIT-------EYVDQLD-MNGKVINSIPMTQYVIDYRNELLS 206
            .||:.| :.:|.:.:  ...|.:.||       |:|:... :..|..:..|....|.:|.:.:..
 Worm   150 DTISKARFAICSIAI--GFVLSSGITLFFWLRYEFVEVKPWIPPKKCSQFPPNYTVSEYMSTMAK 212

  Fly   207 ARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNA 271
            |.:.| :.||               |||                                     
 Worm   213 AYSKA-DQTP---------------LLT------------------------------------- 224

  Fly   272 TFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRK 336
            .|.|...:.|:||.:...|.:..||..|..|...|:|.::       |.|::             
 Worm   225 VFTILDGLSKIIPAVIYPIFTFLLIQQLRAAIALRRKTST-------SMGSR------------- 269

  Fly   337 NSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLL------NAVLGDVFYLQCYLRLSDLMD 395
                ||..| :|:||:|::.:.:.|.|:|.|.||..:|      .:|..|:.|        ||||
 Worm   270 ----LESTK-SDQTTKMVILMTVTFTISEGPIGICYILEGTLPKRSVFRDINY--------DLMD 321

  Fly   396 ---ILALINSSINFILYCSMSKQFR-TTFTLLF 424
               |...||:|::|::...:..|:| :...|||
 Worm   322 AFTIFVAINASVHFLICLGVHSQYRKSAKELLF 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 88/418 (21%)
srw-66NP_493936.2 7TM_GPCR_Srw 41..355 CDD:370978 88/418 (21%)
TM helix 2 67..94 CDD:341315 10/30 (33%)
TM helix 3 112..142 CDD:341315 3/29 (10%)
TM helix 4 156..176 CDD:341315 4/21 (19%)
TM helix 5 223..247 CDD:341315 8/60 (13%)
TM helix 6 274..303 CDD:341315 11/29 (38%)
TM helix 7 317..342 CDD:341315 10/32 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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