DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsR1 and dmsr-6

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_497004.1 Gene:dmsr-6 / 190297 WormBaseID:WBGene00013222 Length:394 Species:Caenorhabditis elegans


Alignment Length:499 Identity:128/499 - (25%)
Similarity:201/499 - (40%) Gaps:140/499 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SGNNET----EPLYCGSGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMR-SPTNAI 62
            :.||.|    |..|      .|...|.|:|.::|.::|:||..||.::|.||||..|| |..:.:
 Worm    11 TNNNLTYFVIEQFY------RFRYLYSNVHPFLSFILCVLGLAANAIHITVLTRPRMRHSSVHTV 69

  Fly    63 LTGLAVADLAVMLEYIPYTIHDYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLA 127
            |..:|::|:..|..|:.|......|:|    :|..||.||.|:|.|::.:..||.|:::|.|.:|
 Worm    70 LVCIAISDMGTMTSYLMYISRFEFLSD----KEGYSYFWALFLKCHAMLSIALHAITLYLVVLMA 130

  Fly   128 VWRYIAVGYPQKNRVWC----GMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVI 188
            ..|..|:......  |.    .:.:.|......:::||    |:| |...|.|....:.|||...
 Worm   131 FIRLSAMKLTTSR--WLDHTRALTSAIFIALFVFIMCV----PTL-LAHQIDETTRGVTMNGMYY 188

  Fly   189 NSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTV 253
                  :|.:.:                             |||:..                  
 Worm   189 ------KYSVGF-----------------------------STLMMQ------------------ 200

  Fly   254 YRLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGA 318
                      :..||......:..:.:|.|||:.|...::.||..|.|...:||.|.        
 Worm   201 ----------NGCSLMKGNLWLTGIFLKAIPCLLLLTFTIALINRLRENNEKRKILI-------- 247

  Fly   319 SNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFY 383
                                |....:|:.|.||.|||.::.:||.||.|||||.:|||:....|:
 Worm   248 --------------------KEERAKKRGDFTTYMLLLMVTVFLFTELPQGIMAILNALFTTQFH 292

  Fly   384 LQCYLRLSDLMDILALINSSINFILYCSMSKQFR-TTFTLLFRPKFLDKWLPVAQDEM------- 440
            ...||.|:|::|:|:|||..:.|::|...|.::| |.|:||...|.....:...|..:       
 Worm   293 QMVYLNLADVLDLLSLINCYVAFLVYSFTSSRYRQTLFSLLPLTKISYSGISTRQGTLKSHQHPG 357

  Fly   441 AAARAER-------SAVAPVLEKGRQQPQVVMASTTTNITQVTN 477
            |....:|       ||.:|:::|.        |.|..|..|.|:
 Worm   358 AKTLVQRANSVEVASARSPLVDKA--------AITRPNSAQPTD 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 106/402 (26%)
dmsr-6NP_497004.1 7tmA_FMRFamide_R-like 33..329 CDD:320109 103/397 (26%)
TM helix 1 34..58 CDD:320109 10/23 (43%)
TM helix 2 67..89 CDD:320109 6/21 (29%)
TM helix 3 109..131 CDD:320109 7/21 (33%)
TM helix 4 152..168 CDD:320109 3/19 (16%)
TM helix 5 207..230 CDD:320109 5/22 (23%)
TM helix 6 257..282 CDD:320109 15/24 (63%)
TM helix 7 297..322 CDD:320109 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H45310
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28978
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_109662
Panther 1 1.100 - - O PTHR46273
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.790

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