DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and dmsr-3

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_496818.1 Gene:dmsr-3 / 190021 WormBaseID:WBGene00012993 Length:376 Species:Caenorhabditis elegans


Alignment Length:397 Identity:92/397 - (23%)
Similarity:166/397 - (41%) Gaps:102/397 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 MHGYVSLVVCILGTIANTLNIIVLTRREMRSPTNAILTGLAVADLAVMLEYIPYTIHDYILTDSL 91
            :|..:.|::||.|.:.:.|.|..|:  .|.:|||..|..::.:.||:.:.:: |:.....::|.|
 Worm    24 IHPPMVLLLCISGALGHMLTITTLS--SMLNPTNMFLISMSCSQLALCINFL-YSTFFKFMSDQL 85

  Fly    92 PREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGY---PQKNRVWCGMRTTIITI 153
            .:....||..|..:.|....:.::|..:::..|.|::.|:.::..   ...|..|...:.:.:.|
 Worm    86 CQPFFFSYYLATTMHFSVTVSVLVHMSAVFHVVALSLIRFFSLAQLSSVNSNVQWFTWQKSRVAI 150

  Fly   154 TTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTS 218
            ...||..:.:..| |:..:.:||..:                      ||..:.|          
 Worm   151 IMIYVSVIFLCIP-LHFTSQVTEVSE----------------------NEGCAER---------- 182

  Fly   219 APLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVVIKLI 283
                                      .|.:||...|:|.::    .:..|:|..|.::.:|.|::
 Worm   183 --------------------------YPALRNKVAYQLSYT----QSIWLRNLNFWLFYLVAKVV 217

  Fly   284 PCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTD 348
            |.|.|.|::. |||..|      ||:....|                      ...::|::||..
 Worm   218 PSIILCIMTC-LILDQL------KKIQVLSA----------------------RFSSVERDKQHS 253

  Fly   349 RTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDLMDILALINSSINFILYCSMS 413
            |||.|:||:::||:|.|.|||::    |||..|..::....|.||.::..|:.|.|.|.|.|||:
 Worm   254 RTTNMILAIMILFIIVELPQGVL----AVLSTVTSVKLIYELGDLTELFTLLTSIIIFTLLCSMN 314

  Fly   414 KQFRTTF 420
            .:.|:.|
 Worm   315 GKIRSAF 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 91/394 (23%)
dmsr-3NP_496818.1 7tm_GPCRs 23..321 CDD:391938 91/395 (23%)
TM helix 1 24..48 CDD:341315 7/23 (30%)
TM helix 2 54..78 CDD:341315 6/24 (25%)
TM helix 3 99..129 CDD:341315 5/29 (17%)
TM helix 4 144..164 CDD:341315 4/20 (20%)
TM helix 5 203..228 CDD:341315 8/25 (32%)
TM helix 6 250..280 CDD:341315 17/33 (52%)
TM helix 7 291..314 CDD:341315 10/22 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28978
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46273
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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