DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-33

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_506844.1 Gene:srw-33 / 188958 WormBaseID:WBGene00005780 Length:378 Species:Caenorhabditis elegans


Alignment Length:449 Identity:98/449 - (21%)
Similarity:174/449 - (38%) Gaps:129/449 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NETEPLYCG---------SGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSPT-N 60
            |.:..||.|         :.:|........:...:|.::.|:|.:....:||||:|:.||:.| |
 Worm     2 NSSNDLYPGFSDEDIKFWTEIDELLAVLSILFNMLSFLISIIGILPTIFHIIVLSRKSMRTLTIN 66

  Fly    61 AILTGLAVADLAVMLEYIP-----YTIHDYILTDSLPREEKLS---YSWACFIKFHSIFAQVLHT 117
            |.|.|:.:.|||.|:..|.     ||.|    ...|...|.:|   ||...|........:::..
 Worm    67 AFLLGIGICDLARMMFIIMVLGPLYTEH----FSHLEHPECMSPNYYSTILFALISGFTGKLVEY 127

  Fly   118 ISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLD 182
            :||||.|.:|:.|.:.:.||..:|:       ...|.:.|.:.|      |:|||...       
 Worm   128 LSIWLAVAMAIIRSLVIKYPLNSRI-------SDLIESKYGIRV------LFLITLPI------- 172

  Fly   183 MNGKVINSIP-MTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSP 246
                :|.||| ..:|.|.                    |.. ::|:             ||    
 Worm   173 ----IILSIPKYFRYSIQ--------------------PFG-SLWV-------------PP---- 195

  Fly   247 VVRNVT-----VYRLYHSDLALHNASLQNATFL--IYSVVIKLIPCIALTILSVRLILALLEAKR 304
              :|.|     .:::.::.:..|... ::..||  :..|:..:||.|.|.|.::.||..|..:::
 Worm   196 --QNCTDFPKNYFQIQYTYVETHIFE-KSTDFLTGMEGVLYVIIPSILLPISTLILIFQLRISRK 257

  Fly   305 RRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQG 369
            :.:.|.....:.|                              ||||:::..:.:.|.|:..|.|
 Worm   258 KSEALRHTSNSGG------------------------------DRTTKLVTFMTISFTISTAPFG 292

  Fly   370 IMGLLNAVLGDVFYLQ----CYLRLSDLMDILALINSSINFILYCSMSKQFRTTFTLLF 424
            |:.|:..::.:....:    ...|::.|..::..||.:|:|.|...:|.|:|.....:|
 Worm   293 ILHLVKVIVSEAIGSEGMNLIVDRIASLFPLIITINGAIHFFLCYFLSSQYRDAVREMF 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 93/416 (22%)
srw-33NP_506844.1 TM helix 1 33..57 CDD:320109 7/23 (30%)
7TM_GPCR_Srw 36..354 CDD:370978 93/415 (22%)
TM helix 2 66..88 CDD:320109 9/21 (43%)
TM helix 3 111..138 CDD:320109 6/26 (23%)
TM helix 4 163..179 CDD:320109 8/32 (25%)
TM helix 5 223..246 CDD:320109 8/22 (36%)
TM helix 6 271..296 CDD:320109 9/24 (38%)
TM helix 7 311..340 CDD:320109 7/28 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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