DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-19

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_506785.2 Gene:srw-19 / 188397 WormBaseID:WBGene00005766 Length:401 Species:Caenorhabditis elegans


Alignment Length:452 Identity:94/452 - (20%)
Similarity:171/452 - (37%) Gaps:165/452 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LYCGSGMDNFHTSYKNMHG--YVSLVVCI--LGTIANTLNIIVLTRREMRSPTNAI---LTGLAV 68
            |.||.       .||.: |  :..:.||:  .....|.|::|||.::|:|  |.||   :.|:.:
 Worm    20 LNCGD-------IYKKL-GLLFADINVCLQFFTVFINILHLIVLFQKELR--TGAIYILMIGICI 74

  Fly    69 AD-LAVMLEYIPYTIHDYILTDSLPREEKLSYSWACFIKFHS-------------------IFAQ 113
            || |..:|::  |.:             .:..:|..:|.|:|                   ||..
 Worm    75 ADILGYLLDF--YNV-------------MIERTWIRWISFYSNIDCLRKDLTYVDVVDFIYIFVF 124

  Fly   114 VLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGM----RTTIITITTAYVVCVLVVSPSLYLITAI 174
            :...:::||.:.:|:.|.::|.:|..|  |...    :..|..|...:....:..|...:.:| :
 Worm   125 MARPVAVWLAMLMALIRTLSVFFPMSN--WIQKLSKPKNAIFMIVVVFTFWTIWHSCQFFAMT-L 186

  Fly   175 TEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTA 239
            ..|.|.||.:            ..:|...                 ||.|               
 Worm   187 RRYRDVLDKS------------CYNYEEH-----------------LNHT--------------- 207

  Fly   240 APPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKR 304
                     .:|.|..:|.|::.::...|:  |:|.:.:.| |.|     ||:|.|::.|...|:
 Worm   208 ---------NSVLVVSVYVSNIYVNRKQLE--TYLQFILTI-LYP-----ILTVSLLIQLRTIKK 255

  Fly   305 RRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQG 369
            :|            :|..|:..|    ||             :|.||:::|.:.:.|:.:|   |
 Worm   256 KR------------NNMNKNALN----DR-------------SDNTTKLILVMTIFFMTSE---G 288

  Fly   370 IMGLLNAVL----------GDVFYLQCYLRLSD--LMDILALINSSINFILYCSMSKQFRTT 419
            :.|:::.:|          |.:..:..:|..:.  |::|..|...|..||.: :||.|:|.|
 Worm   289 LPGVVSFILERIARASTNTGTMEEVALFLGAAQHFLINIRTLNGISHAFICF-AMSSQYRDT 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 89/435 (20%)
TM helix 1 28..53 CDD:410630 8/28 (29%)
TM helix 2 59..84 CDD:410630 9/28 (32%)
TM helix 3 105..135 CDD:410630 9/48 (19%)
TM helix 4 147..167 CDD:410630 3/19 (16%)
TM helix 5 269..294 CDD:410630 7/24 (29%)
TM helix 6 345..375 CDD:410630 8/29 (28%)
TM helix 7 388..413 CDD:410630 7/26 (27%)
srw-19NP_506785.2 7TM_GPCR_Srw 35..357 CDD:402097 88/429 (21%)
TM helix 2 66..88 CDD:410628 6/36 (17%)
TM helix 3 117..139 CDD:410628 4/21 (19%)
TM helix 4 164..180 CDD:410628 2/15 (13%)
TM helix 5 222..244 CDD:410628 8/29 (28%)
TM helix 6 273..295 CDD:410628 6/24 (25%)
TM helix 7 315..343 CDD:410628 7/28 (25%)

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