DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-17

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_506783.1 Gene:srw-17 / 188395 WormBaseID:WBGene00005764 Length:386 Species:Caenorhabditis elegans


Alignment Length:539 Identity:105/539 - (19%)
Similarity:188/539 - (34%) Gaps:213/539 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NETEPLY---CGSGMDNFHTSYKNMHGYVSLVVCILGT---------IANTLNIIVLTRREMRSP 58
            ::.|..|   |..  :|..||......|.:|.:.:..|         ..|.|::|||.::|:|  
 Worm     2 SDDEEFYSEDCAG--ENLFTSLSCGDIYRALGIILSDTNVFMQFFTVFINILHLIVLFQKELR-- 62

  Fly    59 TNAI---LTGLAVAD-LAVMLEY------------IPYTIHDYILTDSLPREEKLSYSWACFIKF 107
            |.||   :.|:.:|| :..:|::            ||:..:.|.|...|.|        ..|:.|
 Worm    63 TGAIYILMIGICLADIIGYLLDFFNVAYERTWISTIPFYTNVYCLRYDLVR--------VSFVDF 119

  Fly   108 HSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVW----CGMRTTIITITTAYVVCVLVVSPSL 168
            .|||.|:...:::||.:.:|:.|.::|.:|..  :|    ...:|.|......:...:|..| |.
 Worm   120 VSIFVQMARPVAVWLAMMMALIRTLSVFFPMS--IWIQKLAKAKTAIFMSVVVFTFWILWYS-SQ 181

  Fly   169 YLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLL 233
            |....:..|.|.|            ::...||...                              
 Worm   182 YFTMTLRWYPDVL------------SKACTDYEEH------------------------------ 204

  Fly   234 TSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVV---------IKLIPCIALT 289
                           ||:|     |..|.:..||        :|:|         |:.||.|...
 Worm   205 ---------------RNLT-----HYVLVVPKAS--------FSLVFKREKLEPFIRFIPAILYP 241

  Fly   290 ILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRML 354
            ||::.|::.|...|::|:.:                            :|.|..:: :|.||:::
 Worm   242 ILTITLLVQLRIIKKKRESM----------------------------NKNLLNDR-SDNTTKLI 277

  Fly   355 LAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDLMDILALINSSINFILY---------- 409
            |.:.|.|:|:|..:||        || :.||..|...:..|.:..:.|::....|          
 Worm   278 LFMTLFFMISEGLEGI--------GD-YILQKILATPNYQDSMVDVISALGVAQYFYTNLRTLNG 333

  Fly   410 ------C-SMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAERSAVAPVLEKGRQQPQVVMAS 467
                  | :||.|:|.|...:                :.:::.:|            :.|.::..
 Worm   334 ISHAFICFAMSSQYRDTVKRM----------------LCSSKKQR------------RGQNILVI 370

  Fly   468 TTTNITQVTNLXHRRSRGR 486
            :|.:::.    .|..||.|
 Worm   371 STVSVSS----SHNSSRSR 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 91/446 (20%)
TM helix 1 28..53 CDD:410630 8/33 (24%)
TM helix 2 59..84 CDD:410630 9/40 (23%)
TM helix 3 105..135 CDD:410630 9/29 (31%)
TM helix 4 147..167 CDD:410630 4/19 (21%)
TM helix 5 269..294 CDD:410630 8/33 (24%)
TM helix 6 345..375 CDD:410630 10/29 (34%)
TM helix 7 388..413 CDD:410630 5/41 (12%)
srw-17NP_506783.1 7TM_GPCR_Srw 38..356 CDD:402097 89/454 (20%)
TM helix 2 67..89 CDD:410630 4/21 (19%)
TM helix 3 118..140 CDD:410630 7/21 (33%)
TM helix 4 165..181 CDD:410630 2/16 (13%)
TM helix 5 213..245 CDD:410630 10/39 (26%)
TM helix 6 274..308 CDD:410630 13/42 (31%)
TM helix 7 323..344 CDD:410630 2/20 (10%)

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