DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and frpr-16

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_495204.1 Gene:frpr-16 / 187838 WormBaseID:WBGene00020023 Length:340 Species:Caenorhabditis elegans


Alignment Length:465 Identity:86/465 - (18%)
Similarity:161/465 - (34%) Gaps:154/465 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 YKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSPT-NAILTGLAVADLAVMLEYIPYTIHDYIL 87
            :..:..::.|.|..:|.:.|..:.:|.....||..| ..:|..|::.|:.:::...|..:..:: 
 Worm     6 FYELKSWMYLPVIFIGLLGNFASFLVYRTAPMRKSTVGTLLLILSLIDILLLILITPIFVLVFL- 69

  Fly    88 TDSLPREEKLSYSWACFIKFH-SIFA----------QVLHTISIWLTVTLAVWRYIAVGYPQKNR 141
              .|.:::...||      || |.||          .:..:.|::|.|.:.:.|:|||..|.:.:
 Worm    70 --PLWQDQWQKYS------FHMSFFAYSTRYVYPLCMMTKSCSLYLMVLITIERWIAVCRPLQAK 126

  Fly   142 VWCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLS 206
            |.|..|.|:.......:..::...|..:      :|        |:.:......:::|       
 Worm   127 VLCTNRNTMKAGIFIIIFSIVFNFPRFF------DY--------KIGDGYLSEMWMLD------- 170

  Fly   207 ARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNA 271
                           .|..|.                          |.:::             
 Worm   171 ---------------TEKHWW--------------------------YFMFY------------- 181

  Fly   272 TFLIYSVVIK-LIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPR 335
             |:|.||:.. .:|.:.:||.:..:|.||.|                    :.....|.|..: |
 Worm   182 -FIILSVIFDYFLPFLIMTIANYHVIRALQE--------------------SDEVITGLAVQK-R 224

  Fly   336 KNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDV-----FYLQCYLRLSDLMD 395
            |:.|          ||.|||.|.:.|.........:.:..::.|..     ||.:.:   ::...
 Worm   225 KDQK----------TTVMLLVVTIFFAFCHLFSMFLKVAESIFGGFLTQTSFYWEVF---AEFTI 276

  Fly   396 ILALINSSINFILYCSMSKQFRTTFTLLFR-PKFLD-----KWLPVAQDEMAAARAERSAVAPVL 454
            .|.:.::|..|.:|...|::|||.|..:.| .:.||     .:|||           .|:.|...
 Worm   277 FLIIFHTSSTFFIYYGFSEKFRTIFHDIIRCRQRLDDVKCSTYLPV-----------NSSGAVSE 330

  Fly   455 EKGRQQPQVV 464
            .|.|:.|.:|
 Worm   331 SKTRKAPAIV 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 73/409 (18%)
TM helix 1 28..53 CDD:410630 5/24 (21%)
TM helix 2 59..84 CDD:410630 5/25 (20%)
TM helix 3 105..135 CDD:410630 11/40 (28%)
TM helix 4 147..167 CDD:410630 2/19 (11%)
TM helix 5 269..294 CDD:410630 7/25 (28%)
TM helix 6 345..375 CDD:410630 7/29 (24%)
TM helix 7 388..413 CDD:410630 4/24 (17%)
frpr-16NP_495204.1 7tmA_FMRFamide_R-like 13..301 CDD:410630 73/406 (18%)
TM helix 1 13..35 CDD:410630 5/21 (24%)
TM helix 2 41..72 CDD:410630 5/33 (15%)
TM helix 3 90..120 CDD:410630 6/29 (21%)
TM helix 4 132..152 CDD:410630 2/19 (11%)
TM helix 5 179..204 CDD:410630 7/38 (18%)
TM helix 6 224..254 CDD:410630 10/39 (26%)
TM helix 7 269..294 CDD:410630 4/27 (15%)

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