DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-142

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_503804.2 Gene:srw-142 / 186692 WormBaseID:WBGene00005889 Length:361 Species:Caenorhabditis elegans


Alignment Length:380 Identity:78/380 - (20%)
Similarity:122/380 - (32%) Gaps:142/380 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   522 NALLPG---TRRTNKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDCGAEATPSGKPT 583
            |.|:.|   ..|..:..|.||.....|..|.:|.....          |.|..|.|....:.|..
 Worm   374 NTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNC----------LIDGYCRAGKLETAKEV 428

  Fly   584 FSLIKPDSMGSMSVTPAGIRLHHRAVVVAAETGGALGGMVRQLSID-------QFENEGRR---V 638
            .|.:|.|.:              :..||...|  .:|||.|...::       ..|.||.:   |
 Worm   429 VSRMKEDEI--------------KPNVVTVNT--IVGGMCRHHGLNMAVVFFMDMEKEGVKGNVV 477

  Fly   639 SYGTPESATAARKLLDRQMSINSVPKKVIAH-LLKPRGWKP-------------PVRRQ------ 683
            :|.|         |:....|:::|.|.:..: .:...|..|             .|||.      
 Worm   478 TYMT---------LIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRV 533

  Fly   684 --------FFLDC---NEIADL-CD--SAERIF---------ASEPTVLQLKAPIKIFGDLHGQF 725
                    |.||.   |.:..| ||  :.|:::         ..:|..:.....|..||. |..|
 Worm   534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGK-HKDF 597

  Fly   726 GDLMRLFDE------------YGSPSTAGDISYIDYLFLGD-------YVDRGQHS--------- 762
            ..:.|:.::            ||:...|       |..:|:       :.|.|.||         
 Worm   598 ESVERMMEQMREDGLDPTVTTYGAVIDA-------YCSVGELDEALKLFKDMGLHSKVNPNTVIY 655

  Fly   763 ---LETISLL----LALKVEYQHNVHLIRGNHEAADINALFGFRIECI--ERMGE 808
               :...|.|    .||.::.:..:.::|.|.|.  .||||    :|:  :..||
 Worm   656 NILINAFSKLGNFGQALSLKEEMKMKMVRPNVET--YNALF----KCLNEKTQGE 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630
TM helix 1 28..53 CDD:410630
TM helix 2 59..84 CDD:410630
TM helix 3 105..135 CDD:410630
TM helix 4 147..167 CDD:410630
TM helix 5 269..294 CDD:410630
TM helix 6 345..375 CDD:410630
TM helix 7 388..413 CDD:410630
srw-142NP_503804.2 7TM_GPCR_Srw 38..347 CDD:402097
TM helix 1 38..61 CDD:410630
TM helix 2 68..93 CDD:410630
TM helix 3 114..144 CDD:410630
TM helix 4 158..178 CDD:410630
TM helix 5 217..242 CDD:410630
TM helix 6 264..294 CDD:410630
TM helix 7 305..333 CDD:410630
Blue background indicates that the domain is not in the aligned region.

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