DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-23

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_507264.2 Gene:srw-23 / 186008 WormBaseID:WBGene00005770 Length:433 Species:Caenorhabditis elegans


Alignment Length:476 Identity:84/476 - (17%)
Similarity:163/476 - (34%) Gaps:176/476 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GYVSLVVCILGTIANTLNIIVLTRREMR-SPTNAILTGLAVADL----------AVMLE--YIPY 80
            |.:::::|:       :::::|.|:.:| |.....:..:.|:|:          |:..:  :.|.
 Worm    84 GILAIILCL-------VHLMILLRKSLRTSGVYVFMIAICVSDILNFSLAYPKDAIYYKHSWFPV 141

  Fly    81 TIHDYILTDSLPREEKLSYSWA---CFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRV 142
            .||:.      ..:|.:.|.|.   ...:...:...|...:||||.:.:|..|.:||.:|..|: 
 Worm   142 PIHNN------NGDECVKYGWIEVDLVAQAMELAHNVTRRLSIWLAMVMASLRTLAVAFPMNNQ- 199

  Fly   143 WCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVIN-SIPMTQYVIDYRNELLS 206
                                               :.:|...||.:: :|.:...:|.|...||.
 Worm   200 -----------------------------------IQKLVKPGKAVSMAIILLIVLISYDMLLLK 229

  Fly   207 ARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNA 271
            :|.:             ..||...|                 |.:...||....|.:      .|
 Worm   230 SRMS-------------FYWLPDDT-----------------RCILKPRLQRYVLVM------PA 258

  Fly   272 TFLIYSV---------VIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPAN 327
            ....||:         :.::...|...:|::.|::.|...|::||.:                  
 Worm   259 NDDAYSISEDQKSVEKIFRVFQIILYPLLTISLVIQLRIIKKKRKSM------------------ 305

  Fly   328 GKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNA-------VLGDVFYLQ 385
                   |:|.|       :|.||.::|.:.:.|:.:|....:..||:.       :|..::..:
 Worm   306 -------RQNEK-------SDNTTLLILVMTITFMFSEGLIVVFSLLDIKGKFRHDILDRLYIFE 356

  Fly   386 -------------CYLRLSDLMDILALINSSINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQ 437
                         ||        .|.|.||..:.::...||.|:|.|...|...|.:.::|   :
 Worm   357 KDEMQNMRILVAVCY--------TLRLFNSMSHILVCVLMSSQYRDTVKSLVLWKTISRFL---K 410

  Fly   438 DEMAAARAERSAVAP--VLEK 456
            |.:...:|....:.|  |.||
 Worm   411 DRILKGKAISDTMYPASVAEK 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 75/442 (17%)
srw-23NP_507264.2 7TM_GPCR_Srw 80..403 CDD:370978 76/443 (17%)
TM helix 2 108..133 CDD:341315 3/24 (13%)
TM helix 3 160..193 CDD:341315 8/32 (25%)
TM helix 4 205..225 CDD:341315 5/19 (26%)
TM helix 5 264..290 CDD:341315 3/25 (12%)
TM helix 6 309..339 CDD:341315 8/36 (22%)
TM helix 7 364..389 CDD:341315 6/32 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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