DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-51

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_507344.1 Gene:srw-51 / 185526 WormBaseID:WBGene00005798 Length:352 Species:Caenorhabditis elegans


Alignment Length:431 Identity:92/431 - (21%)
Similarity:170/431 - (39%) Gaps:140/431 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 MDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSPT-NAILTGLAVADLAVMLEYIPY 80
            :|:|.....:...||..||.|:|.|.|..:.:||.|:.||..| |..:.|:|:.|.:.|:.::..
 Worm    10 IDDFLVQIYSYLNYVIFVVSIIGIILNVFHFLVLFRKSMRQLTINIFMIGIAICDFSQMISFVVV 74

  Fly    81 TIHDY--------ILTDSLPREEKLSYSWACFIKFHSIF---AQVLHTISIWLTVTLAVWRYIAV 134
            ....:        |..:..|.:..:.|      |.:.||   :.|...:::||.|:||:.|...:
 Worm    75 MTSQFYINYKTTQISPECYPPQSYIEY------KINHIFTFISNVSPKLAVWLGVSLAILRASVI 133

  Fly   135 GYPQ----KNRVWC--GMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPM 193
            .:|.    :|.::.  |:| .::||...| .|                                 
 Worm   134 RHPTNSSIQNYIYSKHGIR-ILLTICLPY-AC--------------------------------- 163

  Fly   194 TQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPP----TPSPVVRNVTVY 254
             .::.||              |..|..::|| |            ..||    |..|     ..|
 Worm   164 -YFIYDY--------------TAHSTTISET-W------------ELPPECANTSEP-----DTY 195

  Fly   255 RLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGAS 319
            .||:::   ::.|....:..|..::.||||.|.|.:.:   |:.|.|.|:.||..|         
 Worm   196 TLYYTE---YDESSFRISLFIDGILFKLIPSILLPLFT---IVLLYEMKKTRKVAT--------- 245

  Fly   320 NGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYL 384
                              |::.:.....||:|:::..|.:.||::..|.||:.::.::     :|
 Worm   246 ------------------SRSFQNSNSKDRSTKLVTFVTITFLLSTVPLGILYIIKSI-----FL 287

  Fly   385 QCYL------RLSDLMDILALINSSINFILYCSMSKQFRTT 419
            |..:      :|..:..::::||.:::|::...||.|:|.|
 Worm   288 QSLVISNFANKLQSIFVLISIINGTLHFLICFFMSSQYRNT 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 90/418 (22%)
srw-51NP_507344.1 7TM_GPCR_Srw 23..336 CDD:370978 90/418 (22%)
TM helix 1 23..45 CDD:320109 10/21 (48%)
TM helix 2 54..76 CDD:320109 5/21 (24%)
TM helix 3 105..127 CDD:320109 7/21 (33%)
TM helix 4 152..168 CDD:320109 5/51 (10%)
TM helix 5 208..231 CDD:320109 7/25 (28%)
TM helix 6 256..281 CDD:320109 9/24 (38%)
TM helix 7 297..322 CDD:320109 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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