DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-48

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_507150.2 Gene:srw-48 / 184964 WormBaseID:WBGene00005795 Length:375 Species:Caenorhabditis elegans


Alignment Length:451 Identity:89/451 - (19%)
Similarity:165/451 - (36%) Gaps:131/451 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASGNNETEPLYCGSGMDNFHTSYKNMH--------------GYVSLVVCILGTIANTLNIIVLT 51
            |::.|:....||.....|:|....|...              .|...|:...|...:..::.|||
 Worm     1 MSNINSSDNVLYEYVNFDDFDVESKRFWISILIFVRKLCSCLEYARFVIAFFGLFGSIFHLTVLT 65

  Fly    52 RREMR-SPTNAILTGLAVADLAVMLE--------YIPYTIHDYILTDSLPREEKLSY-SWACFIK 106
            ::.:| |.....|.|:|..||..|.|        |....:..:|....:|   .||| ....|:.
 Worm    66 QKPIRNSSVTIFLIGIATCDLVRMFETIFSLGKMYYKQLLFLHISQTCVP---PLSYIDMTIFVV 127

  Fly   107 FHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLI 171
            .::: ..:...:|:|..|.:..:|.:.:.||.:.|:     .:::| :.|.|..|:..|    |:
 Worm   128 LNAL-DMISVDLSVWFAVGMTTFRALIMRYPFQPRI-----NSLVT-SKAGVYAVIPTS----LL 181

  Fly   172 TAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTST 236
            |.:                     ::..|.:.|            |..|:  ::|          
 Worm   182 TLL---------------------FLAFYHHRL------------TLHPI--SIW---------- 201

  Fly   237 TTAAPPTPSP----VVRNVTVYRLY--HSDLA--LHNASLQNATFLIYSVVIKLIPCIALTILSV 293
                  .|||    ...|.|....|  .:|.:  |.|..:: ....:..::.|.||.|.|  |:|
 Worm   202 ------QPSPDCLDFPSNYTQIEYYWLATDFSGNLSNGIIE-VLINVEGILFKFIPSIIL--LAV 257

  Fly   294 RLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVL 358
            .|:|.....|.:..|||:|                              .::.|.||::::|.|.
 Worm   258 TLLLVFELRKLKIVKLTTK------------------------------NKRDTKRTSKLVLFVT 292

  Fly   359 LLFLITEFPQGIM-GLLNAVLGDVFYLQCYLRLSDLMDILALINSSINFILYCSMSKQFRT 418
            ..|:|...|||:: .::.:|...........:||.....|:::|.:::.::...|:.::||
 Worm   293 FTFIIAIIPQGVLYTIMLSVQEGTIIRSIVDKLSVTYSFLSVLNGTVHPLIIYFMTSEYRT 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 82/408 (20%)
srw-48NP_507150.2 7TM_GPCR_Srw 44..362 CDD:370978 82/408 (20%)
TM helix 2 74..107 CDD:341315 8/32 (25%)
TM helix 3 125..155 CDD:341315 5/30 (17%)
TM helix 4 165..185 CDD:341315 7/45 (16%)
TM helix 5 218..260 CDD:341315 11/44 (25%)
TM helix 6 279..310 CDD:341315 10/30 (33%)
TM helix 7 323..348 CDD:341315 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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