DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-43

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_507225.2 Gene:srw-43 / 184479 WormBaseID:WBGene00005790 Length:295 Species:Caenorhabditis elegans


Alignment Length:384 Identity:73/384 - (19%)
Similarity:144/384 - (37%) Gaps:136/384 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 LSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCV 161
            |||....||:..:....:|..:|:|..|.:.::|.:.:.||...|:       ...:|:.|.:|.
 Worm    29 LSYLEMYFIQLFNSLEIILTDLSVWFVVFMTIFRALVIRYPLNKRI-------SSLVTSKYSLCA 86

  Fly   162 LVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVW 226
            ::  |.::|:                   :|.  :::.:..:.|               ..|..|
 Worm    87 VI--PFIFLV-------------------LPF--WILSFFQKTL---------------FPELKW 113

  Fly   227 LNASTLLTSTTTAAPPTPSP----VVRNVTVYRLYHSDLALH---------NASLQNATFLIYSV 278
                            .|||    ...|.|  ::.:..||:.         ..::.|    :..:
 Worm   114 ----------------KPSPECLGFPSNYT--QIQYRFLAIELTGEFGYELTETMNN----VKGI 156

  Fly   279 VIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEK 343
            :.|.:|.|||::.:..|:..:  .||::.|.|:         |:|.                   
 Worm   157 LFKFLPSIALSLATFALVFEI--RKRKKNKWTT---------GSKK------------------- 191

  Fly   344 EKQTDRTTRMLLAVLLLFLITEFPQGIMGLL------NAVLGDVFYLQCYLRLSDLMDILALINS 402
                :|||:::..|...||:...||||:.::      .:|||.|..     :||..:..::::|.
 Worm   192 ----ERTTKLVSVVTFSFLLAIVPQGILFMIMFKVYETSVLGAVIE-----QLSITLSFVSVMNG 247

  Fly   403 SINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAERSAVAPVLEKGRQQP 461
            .|:.::..|||.::|.|      .|.|..:|...::.::..|     |..::...|.||
 Worm   248 IIHLLIIYSMSSEYRAT------AKNLCSFLKKRKNSVSIFR-----VTKIILNNRMQP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 64/341 (19%)
TM helix 1 28..53 CDD:410630
TM helix 2 59..84 CDD:410630
TM helix 3 105..135 CDD:410630 6/29 (21%)
TM helix 4 147..167 CDD:410630 3/19 (16%)
TM helix 5 269..294 CDD:410630 6/24 (25%)
TM helix 6 345..375 CDD:410630 10/35 (29%)
TM helix 7 388..413 CDD:410630 5/24 (21%)
srw-43NP_507225.2 7tm_GPCRs 1..271 CDD:475119 67/353 (19%)
TM helix 3 38..60 CDD:410628 4/21 (19%)
TM helix 4 81..97 CDD:410628 4/36 (11%)
TM helix 5 130..171 CDD:410628 8/44 (18%)
TM helix 6 195..218 CDD:410628 8/22 (36%)
TM helix 7 233..258 CDD:410628 5/29 (17%)
Blue background indicates that the domain is not in the aligned region.

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