DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsR1 and dmsr-4

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001368505.1 Gene:dmsr-4 / 183924 WormBaseID:WBGene00017038 Length:386 Species:Caenorhabditis elegans


Alignment Length:460 Identity:127/460 - (27%)
Similarity:194/460 - (42%) Gaps:111/460 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EPLYCG--SGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREM-RSPTNAILTGLAVAD 70
            :|...|  ..::.|.:.|...|.|..|.:||:|..:|.::|.||:|..| |...|::||.:|..|
 Worm    21 DPAVSGLIDALEQFQSFYTYFHRYACLFICIVGVFSNAIHIAVLSRPRMRRCAVNSVLTAVAFCD 85

  Fly    71 LAVMLEYIPY--------TIHDYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLA 127
            :..|..|..|        |.|.|            ||.|..|:|||...:..||.|::::...||
 Worm    86 VITMTSYSIYLMRFRFYETDHGY------------SYIWLVFLKFHVWSSMTLHAITLYMGGALA 138

  Fly   128 VWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIP 192
            ..|:.|:|  ..:..|...|.:........||..:|..|:|                  |::.| 
 Worm   139 FIRWQALG--NIHSKWLQPRNSWQLFGVVSVVLSIVCLPTL------------------VLHKI- 182

  Fly   193 MTQYVIDYRNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLY 257
               |.|:......|..:..|..:..|.|......||.||                          
 Worm   183 ---YEIESPEIETSTVSEVLRLSGQSIPKEVRYSLNFST-------------------------- 218

  Fly   258 HSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGT 322
                  ::.:.......:.::|:|.|||..|...::.|::.|.:...:|..|.||..        
 Worm   219 ------YSCAFFKFNLWMLAIVLKAIPCALLLWFTIALVVKLRQTDEKRNYLYSKSF-------- 269

  Fly   323 KSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAV-LGDV-FYLQ 385
                        ||:.|   |....||||.||:.:|::||:||.|||.:.|||.: .||| .|: 
 Worm   270 ------------RKHVK---KTTVPDRTTYMLIIMLVVFLVTELPQGFLALLNGLYTGDVNIYI- 318

  Fly   386 CYLRLSDLMDILALINSSINFILYCSMSKQFRTTF-TLLFRPKFLDKWLPVAQDEMAAAR-AERS 448
             |..||:|:|.|:|||.|::|:|||.||.::|.|| .:|.|   ::.||....:....|| .::.
 Worm   319 -YKNLSELLDFLSLINCSVDFLLYCVMSSRYRQTFGHMLIR---VESWLRNHGERRRLAREIKKK 379

  Fly   449 AVAPV 453
            ..|||
 Worm   380 LPAPV 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 115/408 (28%)
dmsr-4NP_001368505.1 7tmA_FMRFamide_R-like 40..352 CDD:410630 112/404 (28%)
TM helix 1 42..66 CDD:410630 10/23 (43%)
TM helix 2 75..97 CDD:410630 8/21 (38%)
TM helix 3 117..139 CDD:410630 7/21 (33%)
TM helix 4 160..176 CDD:410630 3/15 (20%)
TM helix 5 225..248 CDD:410630 6/22 (27%)
TM helix 6 283..305 CDD:410630 11/21 (52%)
TM helix 7 320..345 CDD:410630 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H45310
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28978
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4802
orthoMCL 1 0.900 - - OOG6_109662
Panther 1 1.100 - - O PTHR46273
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.790

Return to query results.
Submit another query.