DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and srw-14

DIOPT Version :10

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001256659.1 Gene:srw-14 / 183384 WormBaseID:WBGene00005761 Length:314 Species:Caenorhabditis elegans


Alignment Length:401 Identity:77/401 - (19%)
Similarity:145/401 - (36%) Gaps:151/401 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 YCGSGMDNFHTSYK---NMHGYVSLVVCILGTIANTLNIIVLTRREMR-SPTNAILTGLAVADL- 71
            |.....|..:..||   |:....:|.:.|...|.|..::|||.::||| ......:.||.::|: 
 Worm    16 YLAYDYDTDYDIYKTIYNISTKTNLYLEIATIIVNFFHLIVLLQKEMRLCAVYIFMIGLCISDII 80

  Fly    72 ---------AVMLEYIP--YTIHDYILTDSLPREEKLSYSWACFIKFH------SIFAQVLHTIS 119
                     |..|.::|  :...|.|   |..||:        :|:.:      |..:|:...:|
 Worm    81 LTSINFYNQAGELGWLPILFAGSDGI---SCLRED--------YIEINIGMLSMSTTSQITCRLS 134

  Fly   120 IWLTVTLAVWRYIAVGYPQKNRV--WCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLD 182
            :||.:.:||.|.::|.:|...||  :...:.::|.:    ::|::     .:::.:..::.    
 Worm   135 LWLAILMAVIRLLSVTFPMSQRVKNFTAAKGSVIIL----IICLM-----FWILYSTWQFA---- 186

  Fly   183 MNGKVINSIPMTQYVIDYRNELLSARTAALNATPTSAPLNETVWL--NASTL--------LTSTT 237
                                                  |...:||  |||.|        :....
 Worm   187 --------------------------------------LFRVLWLPDNASELCQVMFESSIKPRY 213

  Fly   238 TAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEA 302
            ..|.|...|.:                   |.|..|:.:  ::.....|...:|::.|::|||:.
 Worm   214 VLATPANLPQM-------------------LSNWGFIEF--IVNFSSAIIYPLLTISLLIALLKI 257

  Fly   303 KRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRTTRMLLAVLLLFLITEFP 367
            |:||:.|..|...|                              .|.||:::|.:.:.|:::|  
 Worm   258 KQRRQNLQRKDTEP------------------------------ADNTTKLILFMTITFVLSE-- 290

  Fly   368 QGIMGLLNAVL 378
             |:.| .||:|
 Worm   291 -GLSG-FNALL 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tmA_FMRFamide_R-like 28..420 CDD:410630 72/382 (19%)
TM helix 1 28..53 CDD:410630 7/24 (29%)
TM helix 2 59..84 CDD:410630 6/36 (17%)
TM helix 3 105..135 CDD:410630 9/35 (26%)
TM helix 4 147..167 CDD:410630 2/19 (11%)
TM helix 5 269..294 CDD:410630 4/24 (17%)
TM helix 6 345..375 CDD:410630 8/29 (28%)
TM helix 7 388..413 CDD:410630
srw-14NP_001256659.1 7tm_GPCRs 37..306 CDD:475119 72/380 (19%)
TM helix 2 68..100 CDD:410630 6/31 (19%)
TM helix 3 121..143 CDD:410630 5/21 (24%)
TM helix 4 167..183 CDD:410630 2/24 (8%)
TM helix 5 216..248 CDD:410630 8/52 (15%)
TM helix 6 276..298 CDD:410630 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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