DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR1 and gpr139

DIOPT Version :9

Sequence 1:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001308927.1 Gene:gpr139 / 100493863 XenbaseID:XB-GENE-6042001 Length:348 Species:Xenopus tropicalis


Alignment Length:395 Identity:93/395 - (23%)
Similarity:156/395 - (39%) Gaps:138/395 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 YVSLVVCILGTIANTLNIIVLTR---REMRSPTNAILTGLAVADLAVM--LEYIPYTIHDYILTD 89
            |.|:::| ||..||.|.:|:|::   |..:|..|.:| .||.||:.|:  :.::.:.:.|:||..
 Frog    27 YYSILLC-LGLPANILTVIILSQLVARRQKSSYNYLL-ALAAADIMVLFFIVFVDFLLEDFILNK 89

  Fly    90 SLPRE-EKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITI 153
            .:|:. :|:..    .::|.||     || |||:||.|.:.|||||.:|...........|...|
 Frog    90 QMPQMLDKIIE----VLEFSSI-----HT-SIWITVPLTIDRYIAVCHPLTYHTVSFPARTRKVI 144

  Fly   154 TTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDYRNELLSARTAALNATPTS 218
            .:.|:.|.|                          .|||...:                      
 Frog   145 VSVYITCFL--------------------------TSIPYYWW---------------------- 161

  Fly   219 APLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHSDLALHNASLQNATFLIYSVVIKLI 283
                ..:|:..   .|||:                  ::|..:.:|       .|.:|     |:
 Frog   162 ----PNIWIED---YTSTS------------------VHHILIWIH-------CFTVY-----LV 189

  Fly   284 PCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTD 348
            ||....:|:     :::..|.:||   |.....|.|.|                           
 Frog   190 PCSIFFVLN-----SIIVYKLQRK---SNFRLRGYSTG--------------------------- 219

  Fly   349 RTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDLMDILALINSSINFILYCSMS 413
            :||.:|.::..:|.|...|:.||.|.:..:..:........::|:.::|||:|::|||.|||.:|
 Frog   220 KTTAILFSITSIFAILWAPRIIMILYHLYVSPIHNSWLVHIVTDIANMLALLNTAINFFLYCFIS 284

  Fly   414 KQFRT 418
            |:|||
 Frog   285 KRFRT 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 93/395 (24%)
gpr139NP_001308927.1 7tmA_GPR139 22..291 CDD:320585 93/395 (24%)
TM helix 1 23..49 CDD:320585 10/22 (45%)
TM helix 2 57..82 CDD:320585 7/25 (28%)
TM helix 3 96..126 CDD:320585 16/39 (41%)
TM helix 4 138..158 CDD:320585 7/45 (16%)
TM helix 5 175..200 CDD:320585 8/41 (20%)
TM helix 6 216..248 CDD:320585 11/58 (19%)
TM helix 7 259..284 CDD:320585 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 110 1.000 Inparanoid score I4738
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

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