DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR2 and srw-34

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001023883.2 Gene:srw-34 / 3565702 WormBaseID:WBGene00005781 Length:380 Species:Caenorhabditis elegans


Alignment Length:424 Identity:88/424 - (20%)
Similarity:156/424 - (36%) Gaps:140/424 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YFSLIVCILGTIANTLNIIVLTRREMRS-PTNAILTGLAVAD---LAVMLEY-IP--YTVHDYIL 85
            |.:..|..:..|.|..::|||||:.||: |.:..:.|:.:.|   :|:.|.. ||  :|.:..:.
 Worm    44 YANFFVAAIALIPNFFHLIVLTRKSMRTMPIHIFIFGIGLCDFTRIALFLVMNIPQLWTTYQNLE 108

  Fly    86 SVR-LPREEQLSYSWACFIKFHSVFPQVLHTISIWLTVTLAVWRYIAVSYPQRNRIWCGMRTTLI 149
            :.. :|   .|||......:|:::...|....||||.|.:||:|.:.:.||..:|:. .|.|...
 Worm   109 NPDCIP---PLSYFEMARNEFYTIAVSVCEQSSIWLGVVMAVFRTLLIKYPLSHRLH-RMSTLKY 169

  Fly   150 TIATAYVVCVLVVSPWL--YLVTAIAKF--------LETLDANGKTIASVPLSQYILDYNR--QD 202
            .:.....:.::::|.|:  ||...|..|        .:....|    .|.||  |.::..:  ..
 Worm   170 KLLPIISILLIIISLWIPKYLRYRIRIFGIWFPPPICDKFPKN----YSQPL--YFMEETKIFDG 228

  Fly   203 EVTMQVMSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTTSS-SLGERNVTVYKLYH 266
            |:|.|.::.....|.:.|||              .::|:.|:|..:.... |..:.|        
 Worm   229 EITFQNLTFLEGIVFFLIPS--------------IILPIATISLIIDLKKPSRSQEN-------- 271

  Fly   267 SALALRDRQFRNATFLIYSVLIKLIPCFALTILSVRLIGALLEAKRR--RKILACHAANDMQPIV 329
                 |||..:..||:..|.:|.::|...|.|::      .:::|..  |.||.|          
 Worm   272 -----RDRSSKLVTFMTISFMIAMVPYSGLYIIN------FVQSKSNGIRFILRC---------- 315

  Fly   330 NGKVVIPTQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGIMGLLNVLLGDAFFLQCYLKL 394
                                         :.|:..||:|                          
 Worm   316 -----------------------------IEVIFSFLIT-------------------------- 325

  Fly   395 SDLMDILALINSSINFILYCSMSRQFRSTFALLF 428
                     ||:|::.:|...||.::|.....:|
 Worm   326 ---------INNSLHCVLCYLMSTKYREAVKSMF 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 88/424 (21%)
srw-34NP_001023883.2 TM helix 1 41..67 CDD:341315 8/22 (36%)
7TM_GPCR_Srw 44..350 CDD:370978 87/422 (21%)
TM helix 2 74..103 CDD:341315 6/28 (21%)
TM helix 3 125..154 CDD:341315 10/28 (36%)
TM helix 4 168..188 CDD:341315 2/19 (11%)
TM helix 5 232..257 CDD:341315 7/38 (18%)
TM helix 6 270..300 CDD:341315 11/42 (26%)
TM helix 7 313..339 CDD:341315 10/99 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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