DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR2 and srw-120

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_503816.2 Gene:srw-120 / 187326 WormBaseID:WBGene00005867 Length:370 Species:Caenorhabditis elegans


Alignment Length:418 Identity:77/418 - (18%)
Similarity:141/418 - (33%) Gaps:132/418 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FSLIVCILGTIANTLNIIVLTRREMR-SPTNAILTGLAVADLAVMLEYIPYTVHD---------- 82
            :|..:.|...:.|.::..:|||:.|| |..|.::..:|:.|:...|:.|......          
 Worm    41 YSSEISISSVLINLIHFFILTRKPMRTSSINILMAAVALYDILTSLKQIELIFEQNSDIFFDCYP 105

  Fly    83 -YILSVRLPR---EEQLSYSWACFIKFHSVFPQVLHTISIWLTVTLAVWRYIAVSYPQRNRIWCG 143
             |...|.|.|   :....||..|               |.|..|::|..|.:.|..|        
 Worm   106 TYTFGVGLRRIILDIAKDYSRRC---------------STWFIVSIAFIRTVMVRNP-------- 147

  Fly   144 MRTTLITIATAYVVCVLVVSPWLYLVTAIAKFLETLDANGKTIASVPLSQYILDYNRQDEVTMQV 208
            :.:|..::.......|::|                    |...||:|:|  :..|.....|..: 
 Worm   148 LNSTYQSLGKPKASVVVIV--------------------GVCAASLPIS--VFKYFENQFVEKE- 189

  Fly   209 MSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTTSSSLGERNVTVYKLYHSALALRD 273
                                           ||...:           :|.|.|.:..|.|.:::
 Worm   190 -------------------------------PLYDCA-----------QNGTYYIVTMSDLFMKN 212

  Fly   274 RQFRNATFLIYSVLIK-LIPCFALTILSVRLIGALLE-AKRRRKILACHAANDMQPIVNGKVVIP 336
            ..|....|.:::..:. :|||..|.|:::.||..|.: ||:|..|.:                  
 Worm   213 NGFLAKYFSLFNSFVSDIIPCLLLPIVTLLLIMNLWKTAKKRANITS------------------ 259

  Fly   337 TQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGI-MGLLNVLLGDAFFLQCYLKLSDLMDI 400
                    :.|...:...|.::..|.:.|.:.|||.|: :|.|.:...|:...:.......:..:
 Worm   260 --------VSKNNNSMSKTGLVFCVTITFFIVEFPYGLSLGFLWMFDYDSGISRILSYFGFIFSV 316

  Fly   401 LALINSSINFILYCSMSRQFRSTFALLF 428
            |..:|:..:..:...:|.|:|.|...:|
 Worm   317 LITLNTCTHLFVCLIISSQYRKTTIYIF 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 77/418 (18%)
srw-120NP_503816.2 7TM_GPCR_Srw 53..347 CDD:370978 75/406 (18%)
TM helix 2 71..93 CDD:320109 5/21 (24%)
TM helix 3 114..138 CDD:320109 7/38 (18%)
TM helix 4 163..179 CDD:320109 7/37 (19%)
TM helix 5 218..241 CDD:320109 6/22 (27%)
TM helix 6 270..293 CDD:320109 7/22 (32%)
TM helix 7 308..333 CDD:320109 2/24 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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