DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR2 and srw-31

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_507435.2 Gene:srw-31 / 186943 WormBaseID:WBGene00005778 Length:367 Species:Caenorhabditis elegans


Alignment Length:435 Identity:88/435 - (20%)
Similarity:164/435 - (37%) Gaps:119/435 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YCGTGIDDFHTNYKYFHGYFSLIVCILGTIANTLNIIVLTRREMRS-PTNAILTGLAVAD----L 69
            :|  .|..|...:.|:..:...:..|:||:...:::.:|||:.||: ..|..|.|:|.|:    :
 Worm    20 FC--AIAYFMGTFNYYSDHVHFVALIVGTVLGVIHLTILTRKCMRALSINVFLIGIAAAEIFRAI 82

  Fly    70 AVMLEYIPY----TVHDYILSVRLPRE--EQLSYSWACFIKFHSVFPQVLHTISIWLTVTLAVWR 128
            .:::.:||:    .:.|.:.....|..  ..|||:      ..:.|.::...:|:|..|.:||.|
 Worm    83 CILIIFIPFFDLRYLSDEVSDCSDPNSTVAVLSYN------ISASFMRLAEKVSVWFAVAIAVIR 141

  Fly   129 YIAVSYPQRNRIWCGMRTTLITIATAYVVCVLVVSPWLYLVTAIAKFLETLDANGKTIASVPLSQ 193
            .:.:.||...||.|     |......:.:.||:                       |:..:|.. 
 Worm   142 TLVMRYPVNGRINC-----LTQAKYGFRIVVLI-----------------------TLLIIPFG- 177

  Fly   194 YILDYNRQDEVTMQVMSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTTSSSLGERN 258
             ...|.:.:..:::..:..|..|::     |.|.|.:...|.:|.:..:|               
 Worm   178 -APSYFKLNSTSVRGWTPFTNCVTF-----SENSTKIKFDSHSTELFGST--------------- 221

  Fly   259 VTVYKLYHSALALRDRQFRNATFLIYSVLIKLIPCFALTILSVRLIGALLEAKRRRKILACHAAN 323
             .|||:               ..||..:.::..|...|.|.::.||   ::.::.||       |
 Worm   222 -DVYKI---------------ALLIEGIFLEFTPSIILPITTISLI---MDLRKARK-------N 260

  Fly   324 DMQPIVNGKVVIPTQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGIMGLLNVLL----GD 384
            .:               |.|.........|:.:::..|.:.||.|..|.|.|.::.:.:    | 
 Worm   261 SL---------------STKSSASSSDAVRSIKLVAFVTITFLFTTTPLGFMYIVGIFIVKMPG- 309

  Fly   385 AFFLQCYLKLSDLMDILALINSSINFILYC-SMSRQFRSTFALLF 428
              .:....|.:.::..|..: |.|..||.| .||.|:|||...:|
 Worm   310 --VIMIVTKFARVLTFLTTL-SGIAHILICYLMSTQYRSTAHEMF 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 84/417 (20%)
srw-31NP_507435.2 7TM_GPCR_Srw 36..354 CDD:370978 84/417 (20%)
TM helix 2 66..91 CDD:341315 6/24 (25%)
TM helix 3 116..146 CDD:341315 8/35 (23%)
TM helix 4 160..180 CDD:341315 4/44 (9%)
TM helix 5 224..249 CDD:341315 7/39 (18%)
TM helix 6 276..302 CDD:341315 7/25 (28%)
TM helix 7 315..340 CDD:341315 7/25 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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