DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR2 and dmsr-4

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001368505.1 Gene:dmsr-4 / 183924 WormBaseID:WBGene00017038 Length:386 Species:Caenorhabditis elegans


Alignment Length:443 Identity:116/443 - (26%)
Similarity:181/443 - (40%) Gaps:113/443 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDDFHTNYKYFHGYFSLIVCILGTIANTLNIIVLTRREM-RSPTNAILTGLAVADLAVMLEYIPY 78
            ::.|.:.|.|||.|..|.:||:|..:|.::|.||:|..| |...|::||.:|..|:..|..|..|
 Worm    31 LEQFQSFYTYFHRYACLFICIVGVFSNAIHIAVLSRPRMRRCAVNSVLTAVAFCDVITMTSYSIY 95

  Fly    79 --------TVHDYILSVRLPREEQLSYSWACFIKFHSVFPQVLHTISIWLTVTLAVWRYIAVSYP 135
                    |.|.|            ||.|..|:|||......||.|::::...||..|:.|:.  
 Worm    96 LMRFRFYETDHGY------------SYIWLVFLKFHVWSSMTLHAITLYMGGALAFIRWQALG-- 146

  Fly   136 QRNRIWCGMRTTLITIATAYVVCVLVVSPWLYLVTAIAKFLETLDANGKTIASVPLSQYILDYNR 200
            ..:..|...|.:........||..:|..|.|                                  
 Worm   147 NIHSKWLQPRNSWQLFGVVSVVLSIVCLPTL---------------------------------- 177

  Fly   201 QDEVTMQVMSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTTSSSLGERNVTVYKLY 265
               |..::....:|::..:..|:              |:.|:..|.......||   |.:.|.. 
 Worm   178 ---VLHKIYEIESPEIETSTVSE--------------VLRLSGQSIPKEVRYSL---NFSTYSC- 221

  Fly   266 HSALALRDRQFRNATFLIYSVLIKLIPCFALTILSVRLIGALLEAKRRRKILACHAANDMQPIVN 330
                     .|......:.::::|.|||..|...::.|:..|.:...:|..|...:..       
 Worm   222 ---------AFFKFNLWMLAIVLKAIPCALLLWFTIALVVKLRQTDEKRNYLYSKSFR------- 270

  Fly   331 GKVVIPTQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGIMGLLNVLLGDAFFLQCYLKLS 395
                        |.::|....||||.||:.:|::|||||.|||.:.|||.|......:..|..||
 Worm   271 ------------KHVKKTTVPDRTTYMLIIMLVVFLVTELPQGFLALLNGLYTGDVNIYIYKNLS 323

  Fly   396 DLMDILALINSSINFILYCSMSRQFRSTFA-LLFRPRWLDKWLPLSQHDGEGR 447
            :|:|.|:|||.|::|:|||.||.::|.||. :|.|   ::.||   ::.||.|
 Worm   324 ELLDFLSLINCSVDFLLYCVMSSRYRQTFGHMLIR---VESWL---RNHGERR 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 105/410 (26%)
dmsr-4NP_001368505.1 7tmA_FMRFamide_R-like 40..352 CDD:410630 105/408 (26%)
TM helix 1 42..66 CDD:410630 10/23 (43%)
TM helix 2 75..97 CDD:410630 8/21 (38%)
TM helix 3 117..139 CDD:410630 7/21 (33%)
TM helix 4 160..176 CDD:410630 3/15 (20%)
TM helix 5 225..248 CDD:410630 5/22 (23%)
TM helix 6 283..305 CDD:410630 12/21 (57%)
TM helix 7 320..345 CDD:410630 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H45310
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4802
orthoMCL 1 0.900 - - OOG6_109662
Panther 1 1.100 - - O PTHR46273
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.780

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