DRSC/TRiP Functional Genomics Resources

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Protein Alignment MsR2 and srw-13

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_506767.1 Gene:srw-13 / 183390 WormBaseID:WBGene00005760 Length:368 Species:Caenorhabditis elegans


Alignment Length:472 Identity:91/472 - (19%)
Similarity:156/472 - (33%) Gaps:166/472 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TNMSQPHYCGTGIDDFHTNYKYFHGYFSL----IVCILGTIANTLNIIVLTRREMRSPTNAIL-T 62
            |::|...|.... ||::.:..:....:|:    .:.....|.|..::|||.::|:||.:..|| .
 Worm     7 TSISDYEYIAPD-DDYYQSIFFLTAEYSIKANFYLQAPTIIVNLFHLIVLFQKELRSSSVYILMI 70

  Fly    63 GLAVADL----------AVMLEYIP--------YTV--HDYILSVRLPREEQLSYSWACFIKFHS 107
            |:.::|:          |..|.|:|        |:.  .|| :.|.|..|...:.|         
 Worm    71 GICISDIISTSINFYSKAGELGYVPMIFTGTSGYSCIRSDY-MGVNLGEELVTTAS--------- 125

  Fly   108 VFPQVLHTISIWLTVTLAVWRYIAVSYPQRNRIWCGMRTTLITIATAYVVCVLVVSPWLYLVTAI 172
               |:...:..||.|.:|:.|.|:|.:|...|:     .||.:...:.:..::..:.|....|..
 Worm   126 ---QISRRLFSWLAVVMAIIRLISVMFPMSERV-----DTLTSPQGSVITLIICATFWTLYSTWK 182

  Fly   173 AKFLETLDANGKTIASVPL--SQYIL-DYNRQDEVTMQVMSSTTPDVSWAIPSDSANGTAVSLLS 234
            ..|..........:.|..|  .|:|. :|.....|.|..|.     :.|.|.....|      :|
 Worm   183 FTFYRVFWLPDNAVESCKLYGPQFITPEYVLAAPVKMDRMM-----IDWRIVEFFVN------VS 236

  Fly   235 LTTVIPLTTLSTGVTTSSSLGERNVTVYKLYHSALALRDRQFRNATFLIYSVLIKLIPCFALTIL 299
            ...:.||.|:|                                                      
 Worm   237 SAVIYPLLTVS------------------------------------------------------ 247

  Fly   300 SVRLIGALLEAKRRRKILACHAANDMQPIVNGKVVIPTQPKSCKLLEKEKQ-TDRTTRMLLAVLL 363
               |:.||.:.|:||:                           .|..||.: .|.||:::|.:.:
 Worm   248 ---LLIALRQIKKRRQ---------------------------NLQRKENEPADNTTKLILFMTI 282

  Fly   364 LFLVTEFPQGIMGLLNVLLGDAFFL----QCYLKLSDLMD----------ILALINSSINFILYC 414
            :|   .|.:|:.|.      .|||:    ...:...||:.          :|...|:..:|.:..
 Worm   283 IF---TFSEGLSGF------SAFFIYHIETIAIHYPDLISTAVALEFPIAVLRTFNAFSHFFVCF 338

  Fly   415 SMSRQFRSTFALLFRPR 431
            .:|.|:|.....||..|
 Worm   339 LLSSQYRDVVKSLFTVR 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 84/443 (19%)
srw-13NP_506767.1 7TM_GPCR_Srw 35..355 CDD:370978 84/441 (19%)
TM helix 2 65..98 CDD:341315 8/32 (25%)
TM helix 3 116..148 CDD:341315 10/43 (23%)
TM helix 4 161..181 CDD:341315 1/19 (5%)
TM helix 5 213..247 CDD:341315 10/44 (23%)
TM helix 6 271..298 CDD:341315 10/35 (29%)
TM helix 7 311..341 CDD:341315 4/29 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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