DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsR2 and dmsr-16

DIOPT Version :9

Sequence 1:NP_001261323.1 Gene:MsR2 / 38296 FlyBaseID:FBgn0264002 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001343685.1 Gene:dmsr-16 / 13213403 WormBaseID:WBGene00194821 Length:328 Species:Caenorhabditis elegans


Alignment Length:424 Identity:99/424 - (23%)
Similarity:161/424 - (37%) Gaps:140/424 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 YKYFHGYFSLIVCILGTIANTLNIIVLTRREMR-SPTNAILTGLAVADLAVMLEYIPYTVHDYIL 85
            |:..|.|....:.:|...||.|..|||..:.|| |.||.|:..:::.|....:..:      :.|
 Worm     3 YRPVHHYILASLIVLSFFANALIAIVLANKVMRISGTNIIMLFISICDFGCSVSGL------FQL 61

  Fly    86 SVRLPREEQLSYSWA-----------CFIKFHSVFPQVLHTISIWLTVTLAVWRYIAVSYPQRNR 139
            .:|....|..||..|           ||           ||.|::....:|:.|.::::...:||
 Worm    62 FLRSYTGEYNSYFGAYGQLIVDYLAVCF-----------HTSSLYAASGMALCRVMSLTLSNKNR 115

  Fly   140 -IWCGMRTTLITIATAYVVCVLVVSPWLYLVTAIAKFLETLDANGKTIASVPLSQYILDYNRQDE 203
             .|...:..|      .|.|.: .:|...|.||:.           .|.||..||       :|.
 Worm   116 HQWNTPKYAL------QVACCM-SAPVFILATAVL-----------FINSVKESQ-------EDG 155

  Fly   204 VTMQVMSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTTSSSLGERNVTVYKLYHSA 268
            :.|::                                           |.|...|..:|...:.|
 Worm   156 IYMEI-------------------------------------------SDLSIANECLYMKINLA 177

  Fly   269 LALRDRQFRNATFLIYSVLIKLIPCFALTILSVRLIGALLEAKRRRKILACHAANDMQPIVNGKV 333
                          |..:..||.||.::.:|||.|:..:.:.|:       .|:|..:....||:
 Worm   178 --------------ILGICFKLAPCISMLMLSVLLLQKMDQGKQ-------SASNSTRKDTRGKI 221

  Fly   334 VIPTQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGIMGLLNVL-LGDAFFLQCYLKLSDL 397
                              ||::..:..||::||:||||||:..||..| :.|  :|..|..||..
 Worm   222 ------------------DRSSSFIQFVLIVFLITEFPQGVFNLLGALSIVD--YLNYYQNLSIF 266

  Fly   398 MDILALINSSINFILYCSMSRQFRSTFALLFRPR 431
            |::|:..|::.:||:|.::|.:||..|..||.|:
 Worm   267 MNVLSFFNTTTSFIIYSALSEKFRRLFVQLFLPK 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsR2NP_001261323.1 7tm_4 28..429 CDD:304433 95/414 (23%)
dmsr-16NP_001343685.1 7tmA_FMRFamide_R-like 5..293 CDD:320109 94/413 (23%)
TM helix 1 7..31 CDD:320109 9/23 (39%)
TM helix 2 40..62 CDD:320109 3/27 (11%)
TM helix 3 80..102 CDD:320109 5/32 (16%)
TM helix 4 126..142 CDD:320109 5/16 (31%)
TM helix 5 173..196 CDD:320109 7/36 (19%)
TM helix 6 222..247 CDD:320109 12/24 (50%)
TM helix 7 261..286 CDD:320109 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

Return to query results.
Submit another query.